@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3869: (2016-02-21 )
MAIEKHNIKLATFIAALFYDLSTQKQVRIPTQIEKRDRELYELVKKSKRPVALLVDETHDLNGHTLTGLKRLLELAEDDSGRRRLSIVLAGHPKLCNDLRRPTMEEIGYRTDIFELQEKMQSAGLPV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------.......-----..10---.........--20.-------------.....--..30.---------...-...-------.40---------.........-50---........-60------.-------..--.--...-.70.--.......80...-----.....90........100-----.........110--.......120.....-------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------MAIEKHN-----
I
K
L
----
A
T
F
I
A
A
L
F
Y
--DLS-------------TQKQV--RI
P
T
Q
---------
I
E
K
-
R
D
R
-------
E
L
----------
Y
E
L
V
K
KSKR-
P
V
---
A
L
L
V
DETH-DL------N-------GH--
T
--
L
T
G
-
L
K
R
L
--
L
E
L
AEDDSG
R
R
R
-----
L
S
I
V
LAG
H
P
K
L
C
N
D
LR-------RP
T
M
E
E
IGYRT
D
--
I
F
E
L
Q
E
K
M
Q
SAGLPV-------------------------------------------------------------------------------------------------------------------------
46
Fugue
71.37
26%
-42
* C2 *
4OV4
2
?
A:
[23-408]
P
K
T
I
H
I
Q
D
VTLR
D
G
N
Q
A
LK
R
P
W
T
I
D
E
K
I
E
V
F
D
L
L
V
E
L
NVDGIEVGFPSSN
E
T
E
F
H
T
C
Q
V
L
S
K
R
APKG
K
P
I
A
A
L
S
R
AN
Q
N
E
I
A
V
T
W
E
A
IQKAD
C
P
R
M
H
I
V
Y
P
V
S
D
F
S
I
K
HVLKIS
E
K
E
V
L
Q
K
I
R
N
S
I
S
F
A
R
S
I
V
GPG
I
E
I
Q
F
S
GEHFG
D
A
I
E
N
F
A
-----
F
T
K
----
E
A
F
L
T
A
I
E
A
--
G
A
N
----------------
I
I
--
N
L
P
N
T
---------
V
E
R
Y
R
P
M
-------
V
F
----------
V
N
M
V
K
E
I
K
D
-
V
V
KDK
A
I
I
S
I
H
T
H
N
D
L
------
G
-------
M
A
--
T
--
A
T
S
-
V
E
S
V
--
Y
V
G
A
E
------
Q
-----
I
E
V
A
L
N
G
L
------------------
G
E
R
A
G
N
-
T
N
--
L
Y
E
T
A
I
A
L
H
Q
N
G
E
N
L
NINFQR
I
Y
P
T
A
K
R
I
S
E
L
T
GIPIGEKTPIIGEDIFSHRSGIHQHQSKGAYRTFSPEFVGRMDKETISFTNQS
G
H
K
A
I
E
F
L
L
H
Q
R
G
I
Q
V
S
K
E
G
I
H
H
L
F
S
L
A
K
S
I
S
S
R
ENNREIT
E
A
E
L
V
A
L
S
Q
52
Fugue
70.25
16%
-82
- C2 -
4D10
-
CSN8_HUMAN
H:
[14-212]
---------------------------------------------------------------------------------------------------------------------------------------F
S
F
K
K
L
L
D
Q
C
E
N
Q
E
L
E
A
P
G
GIAT
P
P
V
Y
----
G
Q
L
L
A
L
Y
L
L
H
N
D
M
N
-------------
N
A
R
Y
L
W
K
R
I
P
P
A
---------
I
K
S
-
A
N
S
-------
E
L
----------
G
G
I
W
S
V
G
Q
R
-
I
W
---
Q
R
D
F
P
G
I
Y
-
T
T
I
-----
N
-------
A
H
--
Q
--
W
S
E
T
V
Q
P
I
--
M
E
A
L
R
D
A
T
R
R
R
A
-----
F
A
L
V
S
Q
A
Y
T
S
I
I
---
A
-------
D
D
F
A
A
F
V
G
L
P
----
V
E
E
A
V
K
G
I
L
E
Q
G
W
Q
A
D
S
TTR
M
V
L
P
R
K
PEQ
Q
L
A
R
L
T
D
Y
V
A
F
L
E
N---------------------------------------------------------------------------------------------
24
HHSearch
61.53
19%
-90
- C1 -
1FNN
1
?
A:
[86-180]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
----
T
A
I
I
G
E
I
A
R
--
S
L
N
-------------
I
P
F
P
R
--
R
-
G
L
S
---------
R
D
E
-
F
L
A
-------
L
L
----------
V
E
H
L
R
E
R
D
L
-
Y
M
---
F
L
V
L
D
D
A
F
-
N
L
------
A
-------
P
D
--
I
--
L
S
T
-
F
I
R
L
--
G
Q
E
A
D
K
L
G
-
A
F
R
-----
I
A
L
V
I
V
G
H
N
D
A
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
58.38
24%
-116
- C1 -
2QEN
1
?
A:
[118-173]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-------
E
L
----------
N
D
L
G
E
E
L
-
G
-
E
F
---
I
V
A
F
D
E
A
Q
-
Y
L
------
R
FYGSRGG
K
E
--
L
--
L
A
L
-
F
A
Y
A
--
Y
D
S
L
----
P
--
N
-----
L
K
I
I
L
T
G
S
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
56.20
20%
-77
- C1 -
2QBY
1
CDC61_SULSO
A:
[89-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
----
Y
R
V
L
A
D
L
L
E
--
S
L
D
-------------
V
K
V
P
F
---
T
G
L
S
---------
I
A
E
-
L
Y
R
-------
R
L
----------
V
K
A
V
R
D
Y
G
S
-
Q
V
---
V
I
V
L
D
E
I
D
-
A
F
------
V
K
KYN---
D
D
--
I
--
L
Y
K
-
L
S
R
I
--
N
S
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
54.39
18%
-108
- C1 -
3SYL
-
CBBX_RHOSH
A:
[130-209]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
G
G
---
V
L
F
I
D
E
A
Y
-
Y
L
YRPDDY
G
-------
Q
E
--
A
--
I
E
I
-
L
L
Q
V
--
M
E
N
---
N
R
D
--
D
-----
L
V
V
I
L
A
G
Y
A
D
R
M
E
N
F
F
-------
Q
-
S
N
P
G
F
R
S
R
I
A
H
-
H
I
E
F
P
D
Y
S
D
-------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
53.19
27%
-97
* C1 *
1NJG
-
DPO3X_ECOLI
A:
[126-188]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
F
K
---
V
Y
L
I
D
E
V
H
-
M
L
------
S
-------
R
H
--
S
--
F
N
A
-
L
L
K
T
--
L
E
E
P
--
P
-
E
--
H
-----
V
K
F
L
L
A
T
T
D
-
P
-
Q
K
L
P
-----------
V
T
I
L
S
R
C
L
--
Q
F
H
L
K
A
L
D
V
E
------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
52.47
11%
-112
- C1 -
1SXJ
2
RFC5_YEAST
E:
[134-195]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
Y
K
---
C
V
I
I
N
E
A
N
-
S
L
------
T
-------
K
D
--
A
--
Q
A
A
-
L
R
R
T
--
M
E
K
Y
S
---
K
--
N
-----
I
R
L
I
M
V
C
D
S
--
M
S
P
I
-----------
I
A
P
I
K
S
Q
C
L
--
L
I
R
C
P
A
P
S
D
-------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
51.67
24%
-70
- C1 -
2C9O
1
RUVB1_HUMAN
A:
[295-368]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
P
G
---
V
L
F
V
D
E
V
H
-
M
L
------
D
-------
I
E
--
C
--
F
T
Y
-
L
H
R
A
--
L
E
S
S
---
I
A
--
P
------
I
V
I
F
A
S
N
R
G
N
C
V
I
R
G
TEDITSP
H
G
I
P
L
D
L
L
D
R
V
M
--
I
I
R
T
M
L
Y
T
P
-------------------------------------------------------------------------------------------------------------------------------
53
Fugue
51.13
12%
-47
- C2 -
3FBU
1
?
A:
[1-168]
---------------------------------------------------------------------------------------------------------------------------------------------------
M
F
I
K
A
E
R
-----
L
L
I
R
K
F
E
F
K
D
W
E
A
V
H
E
--
Y
T
S
DSDVMKYIPEGVF
T
E
E
D
T
--
R
N
F
V
N
K
N
MGAK
N
F
P
V
I
L
-
I
G
E
NILV
G
H
I
V
F
----------
H
K
Y
F
G
E
H
T
Y
-
E
I
---
G
W
V
F
N
P
K
Y
-
F
N
------
K
-------
G
Y
--
A
--
S
E
A
-
A
Q
A
T
--
L
K
Y
G
F
K
E
M
K
L
H
R
-----
I
I
A
T
C
Q
P
E
----
N
T
P
S
-------
Y
R
V
M
E
K
I
G
M
R
R
E
--
G
Y
F
K
K
C
I
P
H
G
N
E
W
W
D
E
Y
Y
Y
A
I
L
EEE---------------------------------------------------------------------------------------------------------------
39
HHSearch
50.90
13%
-106
- C1 -
3E2I
1
?
A:
[101-138]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
V
D
---
V
I
G
I
D
E
V
Q
-
F
F
------
D
-------
D
E
--
I
--
V
S
I
-
V
E
K
L
--
S
A
D
--------
G
-----
H
R
V
I
V
A
G
L
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
49.09
22%
-76
- C1 -
3UK6
1
?
A:
[190-261]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
---
V
L
F
I
D
E
V
H
-
M
L
------
D
-------
I
E
--
S
--
F
S
F
-
L
N
R
A
--
L
E
S
---
D
----
M
-----
A
P
V
L
I
M
A
T
N
R
G
I
T
R
I
R
GTSYQSP
H
G
I
P
I
D
L
L
D
R
L
L
--
I
V
S
T
T
P
Y
S
E
-------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
49.04
21%
-50
- C1 -
3N4P
1
TRM3_HCMVA
A:
[155-271]
-------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
S
-----
V
Q
S
----
S
T
L
I
R
V
L
F
Y
--
H
T
P
-------------
D
Q
N
H
I
--
E
Q
P
F
Y
---------
L
M
G
-
R
D
K
-------
A
L
A
V
E
Q
F
I
S
R
F
N
S
G
Y
I
K
A
S
Q
E
-
L
V
---
S
Y
T
I
K
L
S
H
-
D
P
------
I
-------
E
Y
--
L
--
L
E
Q
-
I
Q
N
L
HR------------SD
D
L
I
I
A
V
I
M
A
T
Y
--
L
C
D
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
48.65
21%
-50
- C1 -
3N4Q
2
TRM3_HCMVA
A:
[155-271]
-------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
S
-----
V
Q
S
----
S
T
L
I
R
V
L
F
Y
--
H
T
P
-------------
D
Q
N
H
I
--
E
Q
P
F
Y
---------
L
M
G
-
R
D
K
-------
A
L
A
V
E
Q
F
I
S
R
F
N
S
G
Y
I
K
A
S
Q
E
-
L
V
---
S
Y
T
I
K
L
S
H
-
D
P
------
I
-------
E
Y
--
L
--
L
E
Q
-
I
Q
N
L
HR------------SD
D
L
I
I
A
V
I
M
A
T
Y
--
L
C
D
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
48.50
21%
-111
- C1 -
3PVS
-
RARA_ECOLI
A:
[106-180]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
R
T
---
I
L
F
V
D
E
V
H
-
R
F
-----------------------
A
-
F
L
P
H
--
I
E
D
-----
G
--
T
-----
I
T
F
I
G
A
T
T
E
N
P
S
F
E
L
N
-----------
S
A
L
L
S
R
A
R
--
V
Y
L
L
K
S
L
S
T
-------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
47.99
9%
-75
- C1 -
2V1U
4
CDC61_AERPE
A:
[90-202]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
P
----
Y
R
V
A
S
A
I
A
E
--
A
V
G
-------------
V
R
V
P
F
---
T
G
L
S
---------
V
G
E
-
V
Y
E
-------
R
L
----------
V
K
R
L
S
R
L
R
G
-
I
Y
---
I
I
V
L
D
E
I
D
-
F
L
------
P
-------
K
R
PG
G
--
Q
D
L
-
L
Y
R
I
--
T
R
I
N
Q
E
L
------------
V
S
L
V
G
I
T
N
S
L
G
F
V
E
-------
N
L
-
E
P
R
V
K
S
S
L
G
EV
E
L
V
F
P
P
Y
T
--------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
47.88
50%
-17
- C1 -
2WK8
1
CQSA_VIBCH
B:
[185-222]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----------
A
E
L
V
N
I
S
K
E
F
G
C
---
A
L
L
V
D
E
S
H
-
S
L
------
G
-------
T
H
--
G
--
P
N
G
-
A
G
L
L
--
A
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
47.68
50%
-14
- C1 -
2WKA
1
CQSA_VIBCH
B:
[185-222]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----------
A
E
L
V
N
I
S
K
E
F
G
C
---
A
L
L
V
D
E
S
H
-
S
L
------
G
-------
T
H
--
G
--
P
N
G
-
A
G
L
L
--
A
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
47.40
50%
-15
- C1 -
3KKI
2
CQSA_VIBCH
A:
[205-242]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----------
A
E
L
V
N
I
S
K
E
F
G
C
---
A
L
L
V
D
E
S
H
-
S
L
------
G
-------
T
H
--
G
--
P
N
G
-
A
G
L
L
--
A
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
47.12
18%
-124
- C1 -
2QBY
1
CDC63_SULSO
B:
[133-172]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
R
A
---
I
I
Y
L
D
E
V
D
-
T
L
------
V
-------
K
R
--
R
G
G
D
I
V
-
L
Y
Q
L
--
L
R
S
----
D
A
--
N
-----
I
S
V
I
M
I
S
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------