@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3900: (2016-02-21 )
MSLPAAPKVPPQVAEQAVRWLVELQGGADDERLRQAWQRWRQAAPEHEQAWRHIEAVNQRLAGIGTPLALAAINAPHSPQRRRALKTLLLVLAAGGSAWGLRESGSLQRWSADYATGVGERRRLALADGSRLELNSDTAVDVRFDAGERRLLLLRGEIQLSTGHDPRPLHVYSAEGRLRPVGTRFDVRQFAGRTRVAVHEGAVQVENRAGQGLLLPSGRQLDFDRERLGAPQPLPVGSGAWTDGMLVAAGMRLDEFLAEVARYRPGRLGCDPRIGGLRISGSYPLDDSERILATLPAVLPVEVRRVTRYWVGVHPRE
Atome Classification :
(20 SA)
.........10........20........30........40........50....-....60........70........80..--......90.....---...---100.......----110.......120.......130.......--140-....-....150-----------...----....160...-.-...170.....--..180..-.....190--.--......200.--....--...210...---------..---..220.--...--..---.230...--....240.-----.-----..-------...250.......260...-....-270......-.---.280-.----.----......290--...-....300-.....-...310.....---------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MSLPAAPKV
P
P
Q
V
A
E
Q
A
V
R
W
L
V
E
LQGGA
D
D
E
R
L
R
Q
A
W
Q
R
W
R
Q
AAP
E
H
E
Q
A
W
R
H
I
E
-
A
V
N
Q
R
L
AGIGTP
L
A
L
A
AINAPH
S
P
Q
R
R
R
--
A
L
K
T
L
L
L
V
LAAGG---SAW---GLRESGSLQR----WSADYATGVGER
R
R
L
A
LADG
S
R
L
E
LNSD
T
A
--
V
D
--
V
R
FD-AG
E
R
R
L
L
-----------
L
L
R
----
G
E
I
Q
L
STGHD-P-R
P
L
H
V
YSAEGR--LRPVGT
R
-
F
D
V
R
Q
FAG--R--
T
R
V
A
V
HE
G
-
A
--
V
Q
V
E--NRAGQ
G
L
LL---------PS---GRQLDF--
D
R
E
--RL---GAPQPLP--VGSGAWTD-----G-----
M
L
-------
V
A
AG
M
R
L
D
E
F
L
A
E
V
A
RYRP-GRLG-CD-PRIG
G
L
-
R
---ISG--S----Y----PLDDS
E
R
I
L
--
A
TL-PAVL
P
V
--
E
V
R
R
V
-
T
R
Y
WVGVHPRE---------------------------------------------
41
Fugue
82.48
17%
-70
- C3 -
4M0N
2
?
A:
[20-231]
L
T
E
I
S
V
N
H
---------------------------------------------------------------------------------------------------------------------------
G
E
H
K
Q
V
T
L
P
D
G
T
V
V
H
L
N
A
G
T
V
--
M
R
--
Y
P
T
E
F
T
S
D
I
R
L
V
-----------
E
M
E
----
G
E
A
F
F
N
V
M
R
D
E
G
-
K
P
F
I
V
R
T
R
Q
A
D
--
V
K
V
L
G
A
S
-
F
N
V
K
A
Y
Q
E
DE
L
--
M
A
V
S
V
R
T
G
-
K
--
V
E
V
D
--
M
P
-
E
S
V
M
R
L
---------
L
P
---
N
E
Q
I
I
V
--
N
N
T
NG
E
I
---
L
K
K
N
E
D
A
--
Q
K
V
T
A
W
L
Q
-----
G
-----
G
L
-------
Y
F
N
R
T
P
I
S
S
V
I
H
D
L
E
R
M
Y
N
-
Q
E
I
V
-
L
D
P
N
V
V
F
D
D
-
Y
---
I
Y
G
--
E
----
H
----
D
N
K
S
L
E
A
V
L
--
N
A
I
-
Q
Y
S
T
G
I
--
R
Y
R
K
E
-
E
S
-
R
I
V
L
Y
K
T
S
---------------------------------------------
46
Fugue
70.68
16%
-37
- C5 -
2GOP
-
?
A:
[10-347]
T
F
A
K
F
A
Y
L
S
D
P
R
T
K
G
E
L
V
A
Y
V
L
T
K
A
N
L
K
D
N
K
Y
E
N
T
I
V
I
E
N
L
K
-----
N
N
A
R
R
F
I
E
N
A
T
M
P
R
I
S
P
D
G
K
K
I
A
F
M
R
A
N
E
E
K
K
--------
V
S
E
I
W
V
A
D
L
E
T
L
---
S
S
K
---
K
I
L
E
A
K
N
I
R
S
----
L
E
W
N
E
D
S
----
R
K
L
L
I
V
G
F
K
R
R
E
V
P
A
W
E
K
T
--
T
F
--
W
I
F
D
-
T
E
S
E
E
V
I
-----------
E
E
F
----
E
K
P
R
F
S
S
G
I
W
-
H
-
R
D
K
I
V
V
N
V
P
H
R
EI
I
P
Q
Y
F
K
F
-
W
D
I
Y
I
W
E
D
--
G
--
K
E
E
K
M
F
E
K
V
S
--
F
Y
A
V
--
D
S
D
G
E
R
I
L
L
Y
G
K
P
E
K
KYM
S
E
---
H
N
K
L
Y
I
Y
D
G
K
E
--
V
M
---
G
I
L
D
E
V
D
R
G
V
G
Q
A
K
I
K
D
-----
G
K
V
Y
F
T
L
F
-------
E
E
G
S
V
N
L
Y
I
W
D
G
E
I
K
P
I
A
K
-
G
R
------
H
W
I
M
G
F
-
D
---
V
D
E
I
V
V
----
Y
----
L
K
E
T
A
T
R
------
L
-
R
E
L
F
T
W
DG
E
E
K
Q
L
-
T
D
Y
N
D
P
I
F
A
K
L
---------------------------------------------
45
Fugue
64.85
17%
-36
* C5 *
3WJ9
-
EIF2A_SCHPO
A:
[3-412]
--------
Q
K
S
Q
F
A
Y
R
S
S
K
S
I
G
L
V
N
A
S
E
N
-------
Y
A
S
P
P
K
F
E
A
I
S
E
P
A
R
N
A
C
Y
-
S
P
N
G
K
L
F
A
Y
A
T
A
T
Q
V
V
I
N
D
T
E
S
G
A
K
L
T
Q
LP
A
A
N
T
Y
E
L
G
F
S
P
L
G
K
Y
L
S
T
W
E
R
P
G
K
E
A
D
G
T
P
K
Q
N
M
K
V
W
N
T
E
T
G
Q
L
V
F
S
F
V
Q
R
N
Q
-
T
G
W
N
L
Q
Y
T
C
D
E
S
--
L
A
--
A
R
L
V
-
T
N
E
V
H
F
Y
E
TGNMSKGPIA
K
L
R
VEGI
S
D
F
A
L
S
P
G
Q
N
---
H
A
V
A
V
F
I
P
E
K
K
--
G
A
P
A
S
V
R
T
Y
S
I
P
N
F
N
S
--
P
--
L
S
Q
K
T
F
F
K
-
A
D
K
V
Q
F
K
W
-
N
A
L
G
T
S
L
L
V
---------
L
T
QDK
S
N
K
N
Y
Y
--
G
E
T
TG
Q
F
---
D
L
D
R
E
G
P
--
I
H
D
V
C
W
N
A
DSK
E
F
G
-----
I
V
Y
G
YMP
A
K
T
A
I
F
D
N
R
A
N
V
V
S
I
I
P
P
A
P
R
-
N
T
L
I
-
F
S
-
P
N
S
R
Y
I
-
L
---
L
A
G
--
F
----
G
----
N
L
Q
G
S
I
D
I
F
D
A
A
N
N
M
K
K
I
T
T
V
--
E
A
A
N
C
-
T
Y
C
E
F
S
P
D
S
Q
F
L
L
T
A
V
T
S
PRLRVD
N
S
I
K
I
W
H
ITGAPM
F
Y
E
E
F
NELY
Q
A
F
W
RPRPLN
5
PsiBlast_PDB
57.49
25%
-63
- C3 -
4M0N
1
?
A:
[28-130]
-----------------------------------------------------------------------------------------------------------------------------------
G
E
H
K
Q
V
T
L
P
D
G
T
V
V
H
L
N
A
G
T
V
--
M
R
Y
P
T
E
F
--
T
S
D
I
R
L
V
-----------
E
M
E
----
G
E
A
F
F
N
V
M
R
D
-
E
G
K
P
F
I
V
R
T
R
Q
A
D
--
V
K
V
L
G
A
S
-
F
N
V
K
A
Y
Q
E
--
D
E
L
M
A
V
S
V
R
T
G
-
K
--
V
E
V
D
--
M
P
E
S
V
M
R
L
L
---------
P
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.93
25%
-59
- C3 -
4M0H
2
?
A:
[28-130]
-----------------------------------------------------------------------------------------------------------------------------------
G
E
H
K
Q
V
T
L
P
D
G
T
V
V
H
L
N
A
G
T
V
M
R
Y
P
--
T
E
F
--
T
S
D
I
R
L
V
-----------
E
M
E
----
G
E
A
F
F
N
V
M
R
D
-
E
G
K
P
F
I
V
R
T
R
Q
A
D
--
V
K
V
L
G
G
S
-
F
N
V
K
A
Y
Q
E
--
D
E
L
M
A
V
S
V
R
T
G
-
K
--
V
E
V
D
--
M
P
E
S
V
M
R
L
L
---------
P
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
54.71
42%
-27
- C2 -
5COS
-
?
A:
[14-69]
---------
P
G
E
V
A
E
Q
A
M
H
W
H
L
E
L
Q
E
P
A
V
S
A
A
T
L
A
A
C
M
S
W
R
Q
A
H
P
L
H
E
H
A
W
Q
R
T
Q
-
V
F
A
Q
R
L
R
E
M
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.49
41%
-27
- C2 -
5COS
-
?
A:
[14-69]
---------
P
G
E
V
A
E
Q
A
M
H
W
H
L
E
L
Q
E
P
A
V
S
A
A
T
L
A
A
C
M
S
W
R
Q
A
H
P
L
H
E
H
A
W
Q
R
T
Q
-
V
F
A
Q
R
L
R
E
M
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
51.97
32%
22
- C2 -
4Q2D
3
?
A:
[90-210]
--------------
E
D
A
E
R
W
L
A
F
F
A
G
G
H
D
I
G
K
A
S
P
A
F
Q
--
L
Q
L
R
P
E
Q
G
R
-----
E
-
L
V
A
R
R
L
R
D
A
G
L
P
L
F
N
A
--
R
A
P
H
G
T
I
S
A
N
--
V
L
E
T
V
L
------
A
---
D
V
F
---
G
L
--
S
G
R
S
A
R
----
W
V
A
-
F
A
V
G
-
G
H
H
G
F
V
P
S
Y
D
E
V
R
R
D
L
D
Q
Q
A
V
--
G
W
--
G
M
W
D
-
A
A
-
R
E
V
L
-----------
L
C
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
51.55
32%
23
- C2 -
4Q2C
3
?
A:
[90-210]
--------------
E
D
A
E
R
W
L
A
F
F
A
G
G
H
D
I
G
K
A
S
P
A
F
Q
--
L
Q
L
R
P
E
Q
G
R
-----
E
-
L
V
A
R
R
L
R
D
A
G
L
P
L
F
N
A
--
R
A
P
H
G
T
I
S
A
N
--
V
L
E
T
V
L
------
A
---
D
V
F
---
G
L
--
S
G
R
S
A
R
----
W
V
A
-
F
A
V
G
-
G
H
H
G
F
V
P
S
Y
D
E
V
R
R
D
L
D
Q
Q
A
V
--
G
W
--
G
M
W
D
-
A
A
-
R
E
V
L
-----------
L
C
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
50.20
20%
-90
- C2 -
2A02
-
PUPA_PSEPU
A:
[6-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-------
D
I
P
A
Q
S
M
N
S
A
L
Q
A
L
A
K
Q
T
D
-
T
Q
L
L
-
Y
S
P
E
D
I
G
G
L
-
R
SSA
L
K
G
--
R
----
H
-------
D
L
Q
S
S
L
--
R
I
L
-
L
Q
G
T
G
L
--
R
Y
Q
I
D
-
G
N
T
V
T
V
T
A
------------------------------------------------
24
HHSearch
41.51
13%
-93
- C2 -
3EZJ
-
?
A:
[9-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-----
T
A
-------
N
F
K
D
T
D
L
K
S
F
I
E
T
V
G
A
N
L
N
-
K
T
I
I
-
M
----
V
Q
G
--
A
---
V
S
I
--
R
----
T
M
T
P
L
N
E
R
Q
Y
Y
Q
L
F
--
L
N
L
-
L
E
A
Q
G
Y
--
A
V
V
P
M
E
N
D
V
L
K
V
V
-------------------------------------------------
22
HHSearch
41.30
8%
-112
- C2 -
3GR5
1
?
A:
[6-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
E
K
R
L
G
K
-----
N
E
Y
---
F
I
-------
I
T
K
S
S
P
V
R
A
I
L
N
D
F
A
A
N
Y
S
-
I
P
V
F
-
I
S
-
S
S
V
N
-
D
-
D
---
F
S
G
--
E
----
I
----
K
N
E
K
P
V
K
V
L
--
E
K
L
-
S
K
L
Y
H
L
--
T
W
Y
Y
D
-
E
N
I
L
Y
I
Y
-------------------------------------------------
3
PsiBlast_PDB
41.28
51%
44
- C4 -
1Q1W
1
CAMA_PSEPU
A:
[79-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
--
T
Q
V
T
AI
N
R
D
R
Q
Q
V
I
L
---------
S
D
---
G
R
A
L
D
Y
--
D
R
L
--
V
L
ATG
G
R
P
R
P
L
P
--
V
A
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
41.12
51%
47
- C4 -
1Q1R
1
CAMA_PSEPU
B:
[79-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
--
T
Q
V
T
AI
N
R
D
R
Q
Q
V
I
L
---------
S
D
---
G
R
A
L
D
Y
--
D
R
L
--
V
L
ATG
G
R
P
R
P
L
P
--
V
A
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.95
51%
48
- C4 -
1Q1R
1
CAMA_PSEPU
A:
[79-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
--
T
Q
V
T
AI
N
R
D
R
Q
Q
V
I
L
---------
S
D
---
G
R
A
L
D
Y
--
D
R
L
--
V
L
AT
G
G
R
P
R
P
L
P
--
V
A
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
40.64
51%
44
- C4 -
3LB8
1
CAMA_PSEPU
B:
[78-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
--
T
Q
V
T
AI
N
R
D
R
Q
Q
V
I
L
---------
S
D
---
G
R
A
L
D
Y
--
D
R
L
--
V
L
ATG
G
R
P
R
P
L
P
--
V
A
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.86
51%
50
* C4 *
3LB8
1
CAMA_PSEPU
A:
[78-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
--
T
Q
V
T
AI
N
R
D
R
Q
Q
V
I
L
---------
S
D
---
G
R
A
L
D
Y
--
D
R
L
--
V
L
ATG
G
R
P
R
P
L
P
--
V
A
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
39.51
51%
50
- C4 -
1Q1W
1
CAMA_PSEPU
B:
[79-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
--
T
Q
V
T
AI
N
R
D
R
Q
Q
V
I
L
---------
S
D
---
G
R
A
L
D
Y
--
D
R
L
--
V
L
ATG
G
R
P
R
P
L
P
--
V
A
S
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
39.15
13%
-83
- C2 -
3OSS
-
?
D:
[10-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
-------
N
F
K
D
T
D
L
K
S
F
I
E
T
V
G
A
N
L
N
-
K
T
I
I
-
M
G
-
P
G
V
Q
G
--
K
---
V
S
I
--
R
TMTP
L
----
N
E
R
Q
Y
Y
Q
L
F
--
L
N
L
-
L
E
A
Q
G
Y
--
A
V
V
P
M
---------------------------------------------------------
37
HHSearch
39.09
15%
-100
- C2 -
3D37
1
?
A:
[106-179]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-------
N
V
K
G
M
T
V
L
D
A
A
K
K
L
A
A
P
W
P
Q
I
K
A
V
V
L
K
A
E
N
N
P
A
L
G
K
---
I
D
I
--
E
---------
P
G
E
T
V
W
Q
A
L
--
T
H
I
-
A
N
S
V
G
L
--
H
P
W
L
E
-
P
-------------------------------------------------------