@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA4390: (2016-02-26 )
MLMLSRILLCLAALASSTSALADTVWMKNGDRLTGKITLFDGGKLLLKTDYGGDITLKWDKISTFESEQNLLVKQDAETGEHSKGIKAAGPGQVTLVNGEPKTVELASIQQMMPPKPILQDWVWNGNVDFSLDRKQAENDVSDYDIDFKTNARHGLWRHNVQGEYNREKKNGQVSTDNYSGQYALDRFIDDHWFWQGQVAYKRDMIEDLAKKRTVGTGPGYQFWDNELGAFSIATLVNRNDYEFADGEKEHFYSSSFKWDYNRYLLAKQFELFTNGEVSKPLQSGLDYELQTEAGIRYKLTSWASLSMKAEWDKFSGNDGNVNQRRYTFGLGVGW
Atome Classification :
(20 SA)
--------------------------------........---.10........20.--......--.30.....-----...40....------------....50.....----..-.60-----------........70.......---------.80-.........90........100...-----....110.......120--------...--......130.......140.......150....---------...160.......170------------------.--.......180-.........190.......----------200-.......210-....--.....---220..-------------.....230.....------------------------..240......---.250.......260.......270---------........----280..----------------.....290..-----.....300.......310-...-------....-320.......330.-..---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------M
L
M
L
S
R
I
L
---
L
C
L
A
A
L
AS
S
T
S
A
L
A
--
D
T
V
WMK--NG
D
R
L
T
G
K
-----
I
T
L
FDG
G
K
L
------------
L
L
K
TDYG
G
D
I
T
----
L
K
-WDK-----------ISTFESEQ
N
L
L
V
KQDAE---------TG--EHSKGIKAAGPG
Q
V
T
L
VNGEP
K
T
V
E
-----
L
A
S
I
Q
Q
MMPP
K
P
I
L
Q
----------
D
WV--WNGN
V
D
F
S
LD
R
K
QAENDVSDY
D
I
D
FKTNARHG
L
---------
W
RHNVQGEYNREKKN-------------------G--QVSTDNYS---
G
Q
Y
A
L
D
R
F
IDDH
W
F
WQG
Q
V
----------
A
Y
K
-
R
D
M
I
E
D
L
A
---KKRT--VGTGP---GY
Q
F
W-------------DNELG
A
F
S
I
A
T
L
V------------------------NRNDYEFADGE---
K
E
HFYSSS
F
K
WD
Y
N
R
Y
L
L
A
K
Q
F
E
----------LFTNGEVS----
K
P
L
Q
S----------------GL
D
Y
E
L
QTEA-----G
I
R
Y
K
LTS
W
A
S
L
S
M
K
A
E
W-DKF-------SGND-GNV
N
Q
R
R
Y
T
F
GLGV-GW---------
51
Fugue
71.09
21%
-16
- C4 -
4NNB
2
?
A:
[4-527]
----------T
S
L
Y
I
T
A
A
P
I
GA
V
P
K
F
L
DPFEA
T
F
I
P
S
F
L
L
E
GF
F
D
A
D
R
C
A
S
I
A
A
D
L
K
--
T
D
G
W
E
V
V
P
A
G
G
R
L
L
Q
V
GHAQP
I
A
H
F
P
K
P
W
L
A
A
L
S
N
K
L
A
R
R
I
V
L
Q
L
T
T
Y
G
W
I
V
S
EQG
D
L
L
-
W
E
H
E
R
Q
H
H
Y
L
P
P
A
L
I
E
A
I
E
K
E
S
P
A
L
L
K
N
M
E
E
---------
A
G
W
I
A
C
A
A
G
Y
W
Q
A
G
K
A
R
S
P
Y
L
P
I
T
P
E
A
I
T
-----
E
E
T
I
R
S
M
R
A
G
A
A
V
V
H
L
H
T
R
D
LSD
R
R
R
I
E
--
I
P
G
L
G
V
V
T
V
G
S
Q
R
N
Q
I
V
L
D
D
Y
D
A
I
V
P
M
V
K
K
R
E
P
A
A
I
L
N
L
S
TS
V
R
G
D
R
H
G
A
R
S
K
L
R
R
A
HLKFYDDVGSAPE
V
A
S
L
S
P
A
--
A
V
V
F
Q
G
G
G
---
G
Y
D
N
A
P
D
F
L
D
A
Q
F
D
H
F
E
R
V
GTRPEVE---
V
F
N
-
H
A
I
V
D
N
A
T
SLY
R
D
R
L
--
L
R
T
G
K
---
P
V
L
F
M
L
VAG
V
D
Q
Y
R
R
DPI
T
G
E
V
E
D
D
S
L
I
A
R
V
------------------------
V
R
E
E
I
S
S
L
L
A
D
ES
A
D
S
H
R
R
A
V
E
L
A
I
G
Q
L
R
P
V
V
E
R
L
R
A
----------
S
F
P
V
S
K
I
S
I
L
L
P
G
P
M
Q
N
LL
V
D
V
A
L
G
L
GLD
G
I
R
V
G
L
E
D
G
L
T
V
N
D
ARVPG
G
V
R
K
A
R
G
T
W
E
Q
V
S
L
V
R
E
E
-
L
L
G
-------
R
G
A
T
I
L
T
A
A
Q
V
R
D
M
F
G
L
G
I
------------
50
Fugue
70.94
19%
-16
* C7 *
2BMF
-
?
A:
[169-618]
MASIED
N
P
E
I
E
D
DIFRKK
R
L
T
I
MDLHPGAGKT
K
R
Y
L
P
A
I
V
---
R
E
A
I
K
R
G
L
R
T
L
I
L
A
PT
R
V
V
A
A
E
--
M
E
E
A
L
R
G
L
-----
P
I
R
Y
Q
T
G
R
E
------------
I
V
D
L
M
C
H
A
T
F
T
----
M
R
L
L
S
P
-----------
I
R
V
--
P
N
Y
N
L
I
I
M
D
E
A
H
FTD
P
A
S
I
A
A
R
G
--
Y
I
S
T
R
V
E
M
G
E
A
A
G
I
F
M
T
A
T
P
P
G
S
R
D
PFPQS
N
A
P
I
M
D
E
E
R
E
I
P
E
R
S
WN
S
G
H
-----
E
W
V
TD
F
K
G
K
T
V
W
F
V
P
S
I
K
A
G
N
D
I
A
A
C
L
R
K
N
G
K
K
V
I
Q
-
L
---------
S
R
K
T
F
D
S
E
Y
I
K
T
R
T
N
-------------------
D
WD
F
V
V
T
T
D
I
S
EMG
A
N
F
K
A
E
R
V
I
D
P
R
R
C
M
K
P
V
I
L
T
DG
E
E
R
V
I
L
A
G
P
-
M
P
V
T
H
S
S
A
---
A
Q
R
R
G
R
V
G
R
N
P
KNE
N
D
Q
Y
I
Y
M
G
E
P
L
E
N-----
D
E
D
C
A
H
W
K
E
A
K
M
L
L
D
N
INTPEG
I
I
P
S
M
FEPEREKVDA
I
D
G
E
Y
R
L
R
G
E
A
---
R
K
T
F
V
D
L
M
R
R
G
D
L
P
V
W
L
A
Y
R
V
A
A
E
GINYADRRW
C
F
D
G
V
K
N
N
----
Q
I
L
E
E
----------------
N
V
E
V
E
I
W
T
K
E
-----
G
E
R
K
K
L
--------
K
P
R
W
L
D
A
R
-------
I
Y
S
D
-
P
L
A
L
K
E
F
K
E
F
A
A
G
R
-
K
----------
58
Fugue
60.61
17%
1
- C7 -
3G8Q
2
CDAT8_METKA
A:
[1-278]
-------------------------------M
K
V
S
L
A
G
Q
T
---
V
D
V
K
K
I
L
N
E
I
P
----------------
K
R
T
V
T
-----
A
A
L
L
E
G
G
E
I
------------
V
A
V
E
E
A
D
D
E
---------------------------
H
A
E
R
K
L
V
R
R
H
D
V
E
------------------------
G
K
V
V
F
V
T
A
R
P
C
--------
L
Y
C
A
R
E
L
A
E
A
G
V
-------------------
A
G
V
V
Y
L
G
R
G
R
G
L
G
P
Y
Y
L
A
R
S
G
V
-----------------------
E
V
V
E
V
H
P
D
E
P
L
-------------------
G
--
Y
D
P
V
D
R
L
D
------
V
L
L
T
F
G
G
N
P
Y
L
T
E
E
D
V
----------
A
A
R
V
Y
C
L
L
T
G
R
G
---
F
D
A
D
--
I
A
P
A
P
---
E
------------------
N
L
S
G
--
R
V
E
I
M
V
------------------------
T
R
G
D
---
P
D
E
A
---
V
E
L
L
K
E
E
L
P
V
F
R
I
R
R
F
L
I
S
G
E
F
D
-------------
R
D
E
L
R
----
E
R
I
L
E
----------------
D
I
E
P
R
I
L
D
P
F
-----
A
V
R
A
R
I
A
R
A
G
A
F
S
S
S
R
E
A
-
E
V
F
I
G
D
V
L
T
S
V
G
R
E
-
V
N
L
N
D
P
R
T
V
V
T
V
D
V
L
G
P
R
V
S
V
G
V
E
K
R
34
HHSearch
54.79
28%
-26
- C6 -
1KQ1
2
?
A:
[20-65]
-------------------------------------------------------
T
E
--
V
T
V
F
F
L
--
N
G
F
Q
M
K
G
V
-----
I
E
E
Y
D
K
Y
V
V
------------
S
L
N
S
Q
-
G
K
Q
H
L
----
I
Y
-
K
H
A
-----------
I
S
T
Y
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
52.10
31%
-36
- C6 -
3AHU
1
HFQ_BACSU
A:
[24-75]
-------------------------------------------------------
T
Y
--
V
T
V
F
L
L
--
N
G
F
Q
L
R
G
Q
-----
V
K
G
F
D
N
F
T
V
------------
L
L
E
S
E
-
G
K
Q
Q
L
----
I
Y
-
K
H
A
-----------
I
S
T
F
A
P
Q
K
N
V
Q
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
50.79
24%
-41
* C6 *
2Y90
-
HFQ_ECOLI
A:
[20-69]
-------------------------------------------------------
V
P
--
V
S
I
Y
L
V
--
N
G
I
K
L
Q
G
Q
-----
I
E
S
F
D
Q
F
V
I
------------
L
L
K
N
--
T
V
S
Q
M
----
V
Y
-
K
H
A
-----------
I
S
T
V
V
P
S
R
P
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
50.59
21%
-23
- C6 -
3HFO
-
?
A:
[22-69]
-------------------------------------------------------
T
P
--
V
E
I
K
L
L
--
T
G
D
S
L
F
G
T
-----
I
R
W
Q
D
T
D
G
L
------------
G
L
V
D
D
S
E
R
S
T
I
----
V
R
-
L
A
A
-----------
I
A
Y
I
T
P
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
49.89
22%
-36
- C6 -
3SB2
-
?
A:
[21-71]
-------------------------------------------------------
V
P
--
V
S
I
Y
L
V
--
N
G
I
K
L
Q
G
H
-----
V
E
S
F
D
Q
Y
V
V
------------
L
L
R
N
--
T
V
T
Q
M
----
V
Y
-
K
H
A
-----------
I
S
T
V
V
P
A
R
A
V
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
49.81
24%
-33
- C6 -
1U1S
-
HFQ_PSEAE
A:
[20-71]
-------------------------------------------------------
V
P
--
V
S
I
Y
L
V
--
N
G
I
K
L
Q
G
Q
-----
I
E
S
F
D
Q
F
V
I
------------
L
L
K
N
--
T
V
S
Q
M
----
V
Y
-
K
H
A
-----------
I
S
T
V
V
P
S
R
P
V
R
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
48.98
34%
5
- C6 -
4NOY
1
?
C:
[24-74]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
W
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
--
H
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
48.93
34%
2
- C6 -
4NOY
3
?
B:
[24-72]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
W
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
--
H
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
48.52
34%
8
- C6 -
4NOY
2
?
D:
[24-71]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
W
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
--
H
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
48.45
34%
7
- C6 -
4NOY
3
?
A:
[24-73]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
W
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
--
H
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
48.09
34%
6
- C6 -
4NOY
2
?
F:
[24-75]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
W
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
--
H
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
P
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_CBE
47.91
34%
-7
- C6 -
4NL3
1
?
I:
[24-74]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
F
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
-
H
-
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_CBE
47.88
34%
-5
- C6 -
4NL3
1
?
F:
[24-75]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
F
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
-
H
-
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
P
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
47.72
34%
-4
- C6 -
4NL2
1
?
C:
[24-74]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
F
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
-
H
-
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_CBE
47.59
34%
-4
- C6 -
4NL3
1
?
L:
[24-74]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
F
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
-
H
-
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
47.56
34%
-1
- C6 -
4NL2
2
?
B:
[24-72]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
F
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
-
H
-
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
47.17
34%
-5
- C6 -
4NL3
1
?
E:
[24-73]
------------------------------------------------------------
T
V
F
L
T
--
N
G
F
Q
L
R
G
R
-----
V
V
S
F
D
N
F
T
V
------------
L
L
D
V
E
G
K
Q
Q
L
V
----
F
K
-
H
-
A
-----------
I
S
T
F
S
P
Q
K
N
V
A
L
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------