@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA4738: (2016-03-01 )
MNSDVIKGKWKQLTGKIKERWGDLTDDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDRL
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10---.........20.-..-.....30.---...--.----...40...-.....50..--....-..60....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------MNSDVIK
G
K
W
----
K
Q
L
T
G
K
I
K
E
R
WG-DL-TDDDLQAA---DG
H
--
A
----
E
Y
L
V
G
K
L
Q
-
E
R
YGW
S
K
E
R
--
A
E
Q
E
-
V
R
D
F
SDRL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
98.89
100%
-61
- C2 -
1YWW
-
Y4738_PSEAE
A:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
S
D
V
I
K
G
K
W
----
K
Q
L
T
G
K
I
K
E
R
W
G
-
D
L
-
T
D
D
D
L
Q
A
A
---
D
G
H
--
A
----
E
Y
L
V
G
K
L
Q
-
E
R
Y
G
W
S
K
E
R
--
A
E
Q
E
-
V
R
D
F
S
D
R
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
98.89
100%
-61
- C2 -
1YWW
-
Y4738_PSEAE
A:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
S
D
V
I
K
G
K
W
----
K
Q
L
T
G
K
I
K
E
R
W
G
-
D
L
-
T
D
D
D
L
Q
A
A
---
D
G
H
--
A
----
E
Y
L
V
G
K
L
Q
-
E
R
Y
G
W
S
K
E
R
--
A
E
Q
E
-
V
R
D
F
S
D
R
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
79.65
54%
-47
- C2 -
1RYK
-
YJBJ_ECOLI
A:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
D
E
A
G
G
N
W
----
K
Q
F
K
G
K
V
K
E
Q
W
G
-
K
L
-
T
D
D
D
M
T
I
I
---
E
G
K
--
R
----
D
Q
L
V
G
K
I
Q
-
E
R
Y
G
Y
Q
K
D
Q
--
A
E
K
E
-
V
V
D
W
E
T
R
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
79.32
53%
-46
- C2 -
1RYK
-
YJBJ_ECOLI
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
D
E
A
G
G
N
W
----
K
Q
F
K
G
K
V
K
E
Q
W
G
-
K
L
-
T
D
D
D
M
T
I
I
---
E
G
K
--
R
----
D
Q
L
V
G
K
I
Q
-
E
R
Y
G
Y
Q
K
D
Q
--
A
E
K
E
-
V
V
D
W
E
T
R
N
EYRW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
77.59
54%
-44
- C2 -
1RYK
-
YJBJ_ECOLI
A:
[1-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
D
E
A
G
G
N
W
----
K
Q
F
K
G
K
V
K
E
Q
W
G
-
K
L
-
T
D
D
D
M
T
I
I
---
E
G
K
--
R
----
D
Q
L
V
G
K
I
Q
-
E
R
Y
G
Y
Q
K
D
Q
--
A
E
K
E
-
V
V
D
W
E
T
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.68
30%
-2
- C2 -
1QS1
-
?
A:
[285-336]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
W
A
K
D
L
-
T
D
S
Q
R
E
A
L
---
D
G
Y
--
A
R
QD
Y
K
E
I
N
N
Y
L
R
-
N
Q
G
G
S
G
N
E
K
--
L
D
A
Q
-
I
K
N
I
S
D
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
53.53
24%
-2
- C2 -
4PXU
1
KL61_DROME
A:
[25-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
H
----
K
A
M
L
D
S
M
Q
E
K
F
A
-
T
I
-
I
D
S
S
L
Q
S
V
---
E
E
H
--
A
----
K
Q
M
H
K
K
L
E
-
Q
L
G
A
M
S
L
P
D
--
A
E
-
E
-
L
Q
N
L
Q
E
E
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
51.23
16%
-21
- C2 -
3G2B
1
PQQD_XANCP
A:
[6-95]
------------------------------------------------------------------------------------------------------------------------------------------------------TISRD
S
C
P
A
LRAGVR
L
Q
H
D
R
A
R
D
Q
W
----
V
L
L
A
P
E
R
V
V
E
L
D
-
D
I
-
A
L
V
V
A
Q
R
Y
---
D
G
T
QS
L
----
A
Q
I
A
Q
T
L
A
-
A
E
F
D
A
D
A
S
E
--
I
E
T
D
-
V
I
E
L
T
T
T
L
H
Q
K
RLLRL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
50.60
30%
9
- C2 -
1QS2
1
?
A:
[224-275]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
W
A
K
D
L
-
T
D
S
Q
R
E
A
L
---
D
G
Y
--
A
R
QD
Y
K
E
I
N
N
Y
L
R
-
N
Q
G
G
S
G
N
E
K
--
L
D
A
Q
-
I
K
N
I
S
D
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
45.08
22%
-33
- C2 -
4UM2
1
EST1A_HUMAN
A:
[1-582]
-----------------------------------------------------------------------------------------S
M
E
L
H
R
L
L
R
V
A
D
N
Q
E
L
Q
L
S
N
L
L
S
RDRIS
P
E
G
L
E
K
M
A
Q
L
R
A
E
L
L
Q
L
Y
E
R
C
I
L
L
D
I
E
F
S
D
N
Q
N
V
D
Q
I
L
W
K
N
AF
Y
Q
V
I
E
K
F
R
Q
L
V
K
D
P
N
----
V
E
N
P
E
Q
I
R
N
R
L
L
-
E
L
-----
L
D
E
G
---
S
D
F
--
F
----
D
S
L
L
Q
K
L
Q
-
V
T
Y
K
F
---
K
--
L
E
D
Y
-
M
D
G
L
A
I
R
L
R
K
T
V
K
Y
A
L
I
S
A
Q
R
C
M
I
C
Q
G
D
I
A
R
Y
R
E
Q
A
S
DTANY
G
K
A
R
S
W
Y
L
K
A
Q
H
I
APKNG
R
P
Y
N
Q
L
A
L
L
A
V
Y
T
RR
K
L
D
A
V
Y
Y
Y
M
R
S
L
A
ASNPI
L
T
A
K
E
S
L
M
S
L
F
E
E
T
K
R
K
A
E
Q
M
EKGLGSLS
P
S
D
L
N
K
R
F
I
L
S
F
L
H
A
H
G
K
L
F
TRIGMET
F
P
A
V
A
E
K
V
L
K
E
F
Q
V
L
L
Q
HSPSPIG
S
T
R
M
L
Q
L
M
T
I
N
M
F
A
V
H
N
SQRS
V
I
Q
E
Q
A
A
A
L
G
L
A
M
F
S
L
L
V
R
R
C
T
C
L
L
K
E
SLSSPEDQDDQDDIKVSSFV
P
D
L
K
E
L
L
P
S
V
K
V
W
S
D
W
M
L
G
Y
PDTWNPPPTSLDLPSHVAVD
V
W
S
T
L
A
D
F
C
N
I
L
T
A
VNQSE
V
P
L
Y
KDPDDD
L
T
L
L
I
L
E
E
D
R
L
L
SGFVPLLAAPQ
D
P
C
Y
V
E
KTSD
K
V
I
A
A
D
C
K
R
V
T
V
L
K
Y
F
L
E
A
L
C
G
QEEPLLAFKGG
K
Y
V
S
VAPV
24
Fugue
42.10
23%
19
- C2 -
4QPV
-
?
A:
[17-290]
SVPEEMEASKYVGQGFQPPAE
K
D
A
I
E
F
S
K
K
H
K
D
K
I
A
K
R
G
E
Q
F
F
M
D
N
FG
L
K
V
K
A
T
N
V
V
G
S
GD
G
V
E
V
F
V
H
C
DDHDI
V
F
N
A
S
I
P
F
D
KSIIESDSSLRSEDKG
D
D
M
S
T
L
V
G
T
V
L
S
G
F
E
Y
R
A
H
K
E
E
L
D
N
L
T
E
V
L
K
E
Y
K
SKYKYTGYT
E
N
A
I
M
K
TQNSGFRNEY
Y
Y
L
T
A
I
P
Y
T
L
D
E
Y
K
R
Y
F
----
Q
P
L
I
K
E
D
D
K
S
F
R
-
D
G
M
R
N
S
K
K
Q
L
K
---
D
K
S
--
R
----
P
Y
V
V
T
T
L
F
S
T
K
D
N
F
T
K
D
N
--
T
I
D
E
M
I
-
D
F
S
E
V
L
K
K
KKNIPHD
L
N
V
S
L
Q
I
S
N
KYINTKRPNYSK
K
E
V
I
E
V
G
VFNHE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
41.91
13%
8
* C2 *
1U84
2
?
A:
[6-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------GQ
Q
L
N
R
L
L
L
E
W
I
G
----
A
W
D
P
F
G
L
G
K
D
A
Y
-
D
V
-
E
A
A
S
V
L
Q
A
V
Y
E
T
E
D
--
A
----
R
T
L
A
A
R
I
Q
-
S
I
Y
E
F
A
F
D
E
PI
P
F
P
H
-
C
L
K
L
A
R
R
L
L
E
L
K
Q
A
A
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
41.19
18%
-1
- C2 -
2Y6X
-
PSB27_THEEB
A:
[38-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
Q
A
E
--
A
R
K
K
-
L
N
D
F
F
A
L
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
39.45
8%
-41
- C2 -
3FX7
-
?
A:
[25-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
E
E
V
----
N
S
L
S
N
H
F
H
N
L
-
E
-
S
W
-
R
D
A
R
R
D
K
F
---
S
E
V
--
L
----
D
N
L
K
S
T
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
38.26
20%
32
- C2 -
2I7U
-
?
A:
[1-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
----
R
E
E
A
A
K
L
F
E
E
W
K
-
K
L
-
A
E
E
A
A
K
L
L
---
E
G
G
--
G
----
G
G
G
G
G
E
L
M
-
K
L
C
E
E
A
A
K
K
--
A
E
E
L
-
F
K
L
A
E
E
R
L
K
KL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
37.47
18%
10
- C2 -
2KMF
-
PSB27_SYNY3
A:
[37-53]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
Q
D
T
--
A
R
G
Q
-
I
N
D
Y
I
S
R
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
37.38
10%
-33
- C2 -
3G2B
-
PQQD_XANCP
A:
[55-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
S
--
L
----
A
Q
I
A
Q
T
L
A
-
A
E
F
D
A
D
A
S
E
--
I
E
T
D
-
V
I
E
L
T
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
35.82
30%
-12
- C2 -
4JPJ
-
A:
[104-146]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
C
D
I
S
R
A
K
W
D
N
T
L
K
Q
I
A
S
K
L
R
E
Q
F
G
-
D
R
-
T
I
I
F
K
Q
S
S
---
G
G
D
--
P
----
E
F
V
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
35.31
7%
5
- C2 -
1HE1
2
?
A:
[89-132]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
----
G
T
T
G
G
A
A
S
Q
L
V
L
-
D
A
-
S
P
E
L
R
R
E
I
---
T
D
Q
--
L
----
H
Q
V
M
S
E
V
A
-
L
L
R
Q
A
V
E
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
31.85
12%
12
- C2 -
1H8B
1
A:
[3-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
D
T
D
T
A
E
Q
V
----
I
A
S
F
R
I
L
A
S
D
K
P
-
Y
I
-
L
A
E
E
L
R
R
E
L
P-
P
D
Q
--
A
----
Q
Y
C
I
K
R
M
P
-
A
Y
S
G
P
G
S
V
P
--
G
A
L
D
-
Y
A
A
F
S
S
A
L
Y
G
ESDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------