@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA4970: (2016-03-03 )
MGLNLLRERYRVDLASLQATCEANYARLMRLLPDMREAQASRRVALSEGERLLGVLALEVTEACPYTTTLQVRQELGLPWLPAPRLEVRVYHDARMAEVIGAEQARRLMAIYPYPNQAMHQPDEKNQLNLFLGEWLAHCLACGHEMEPVAQR
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------.........10........20...-..-------------...-.30...-----.....----40..-......50........60........-----70.------.......----80..-.-.....90..-...-.--..-100---...-.------...110......-.120.....------...130.--.----...------.-------------.140-....--...150------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------M
G
L
N
L
L
R
E
R
Y
R
V
D
L
A
S
L
Q
A
T
-
C
E
A
-
N
Y
-------------
A
R
L
-
M
R
L
L
P
D
-----
M
R
E
A
Q
----
A
SR
R
-
V
ALSEG
E
R
L
L
G
V
L
A
L
E
V
TEACPY
T
T
T
-----
L
Q
V
------
R
Q
E
LGLP----WLPA-P-
R
L
E
V
R
V
YHD-
A
R
M
-
A
--
E
V
-
I
G
A
---
E
Q
A-
R
------
R
L
M
A
I
YPYP
N
Q
A-MH-QPDEKN------
Q
L
N
L
F
L
G
--
E
----
W
L
A
------
H
-------------
C
L
AC-GHEM--EPVAQR------------------------------------------------------------------------------------
1
PsiBlast_PDB
77.41
31%
-52
- C4 -
2IW3
1
EF3A_YEAST
A:
[336-412]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
H
A
G
D
V
S
T
T
-----
L
Q
V
------
V
N
E
L
L
K
D
----
E
T
V
A
-
P
-
R
F
K
I
V
V
E
Y
I
-
A
A
I
G
A
--
D
L
-
I
D
E
RII
D
Q
Q
-
A
------
W
F
T
H
I
T
P
Y
M
T
I
F
-
L
H
-
E
K
K
A
K
D
------
I
L
D
E
F
-------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
77.37
31%
-49
- C4 -
2IX3
1
EF3A_YEAST
A:
[336-412]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
H
A
G
D
V
S
T
T
-----
L
Q
V
------
V
N
E
L
L
K
D
----
E
T
V
A
-
P
-
R
F
K
I
V
V
E
Y
I
-
A
A
I
G
A
--
D
L
-
I
D
E
RII
D
Q
Q
-
A
------
W
F
T
H
I
T
P
Y
M
T
I
F
-
L
H
-
E
K
K
A
K
D
------
I
L
D
E
F
-------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
75.71
31%
-50
- C4 -
2IWH
1
EF3A_YEAST
A:
[336-412]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
H
A
G
D
V
S
T
T
-----
L
Q
V
------
V
N
E
L
L
K
D
----
E
T
V
A
-
P
-
R
F
K
I
V
V
E
Y
I
-
A
A
I
G
A
--
D
L
-
I
D
E
RII
D
Q
Q
-
A
------
W
F
T
H
I
T
P
Y
M
T
I
F
-
L
H
-
E
K
K
A
K
D
------
I
L
D
E
F
-------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
73.63
20%
-32
- C5 -
2RHK
4
NS1_I72A2
A:
[2-120]
---------------------------------------------------------------------------------------------------------------------------------------------------
P
A
S
R
Y
I
T
D
M
T
-----------------------------------------
I
E
E
L
----
S
R
D
W
-
F
M
L
M
P
K
Q
K
V
E
G
P
L
C
I
R
I
D
Q
A
-
I
M
D
K
N
-----
I
M
L
------
K
A
N
F
S
V
I
----
F
----
D
-
R
L
E
T
L
I
L
L
R
-
A
F
T
-------------
E
E
G
-
A
------
I
V
G
E
I
S
P
L
P
S
F
P
-
G
H
T
I
E
D
V
K
N
------
A
I
G
V
L
I
G
G
L
E
----
W
N
D
------
N
-------------
T
V
R
V
-
S
K
T
L
--
Q
R
F
A
W
-------------------------------------------------------------------------------------
2
PsiBlast_PDB
72.31
31%
-27
- C4 -
2IX8
-
A:
[1330-1406]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
H
A
G
D
V
S
T
T
-----
L
Q
V
------
V
N
E
L
L
K
D
----
E
T
V
A
-
P
-
R
F
K
I
V
V
E
Y
I
-
A
A
I
G
A
--
D
L
-
I
D
E
RII
D
Q
Q
-
A
------
W
F
T
H
I
T
P
Y
M
T
I
F
-
L
H
-
E
K
K
A
K
D
------
I
L
D
E
F
-------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
66.24
13%
-67
- C3 -
1FD9
2
MIP_LEGPH
A:
[9-212]
---------------------------------------------------------------------------------------------------------------------------------T
D
K
D
K
L
S
Y
S
I
G
A
D
L
G
K
N
F
K
N
Q
G
I
D
V
N
P
E
A
M
A
K
G
-
M
Q
D
-
A
M
S
GAQLALT
E
Q
Q
M
K
D
V
L
-
N
K
F
Q
K
D
-----
L
M
A
K
R
----
T
A
E
F
-
N
K
K
A
D
E
N
K
V
K
G
E
A
F
L
T
E
N
K
N
K
P
G
V
V
V
L
PSG
L
Q
Y
K
------
V
I
N
S
G
N
G
----
V
K
P
G
-
K
-
S
D
T
V
T
V
E
Y
T
-
G
R
L
-
I
DG
T
V
-
F
D
S
---
T
E
K
-
T
G
K
P
A
T
F
Q
V
S
Q
V
I
P
G
W
T
E
A
-
L
Q
-
L
M
P
A
G
S
------
T
W
E
I
Y
V
P
--
S
----
G
L
A
------
Y
GPRSVGGPIGPN
E
T
L
I
F
-
K
I
H
L
--
I
S
V
K
K
S
------------------------------------------------------------------------------------
5
PsiBlast_PDB
62.50
26%
-28
- C4 -
1E6V
3
MCRA_METKA
A:
[438-520]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
G
Q
G
R
L
G
F
Y
G
Y
A
L
Q
D
Q
C
G
A
A
N
S
-----
L
S
V
------
R
S
D
E
G
L
P
LELR
G
P
N
Y
-
P
-
N
Y
A
M
N
V
G
H
L
-
G
E
Y
-
A
--
G
I
-
V
Q
A
---
A
H
A
-
A
------
R
G
D
A
F
C
V
H
P
V
I
K
-
V
A
-
F
A
D
E
N
-------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
61.44
9%
-87
- C2 -
3MAH
1
?
A:
[7-151]
----------------------------------------------------------------------------------------------------------------------------------------------
D
C
I
K
A
V
A
A
K
D
G
I
T
V
I
K
V
K
S
S
-
N
K
L
-
L
S
-------------
W
H
F
M
R
K
L
F
E
I
-----
F
E
F
Y
Q
----
E
P
V
D
M
V
A
T
S
E
V
G
V
S
L
T
I
--------
D
N
D
K
N
L
-----
P
D
I
------
V
R
A
L
----------
S
-
D
-
I
G
D
V
T
V
D
K
D
M
V
-
I
-
I
--
C
I
-
V
G
V
---
G
F
E
-
A
------
R
I
I
N
A
L
K
G
V
P
V
R
M
I
S
-
Y
G
G
S
N
Y
------
N
V
S
V
L
V
K
--------
A
E
------
D
-------------
K
K
K
A
-
L
I
A
L
--
S
N
K
L
F
N
------------------------------------------------------------------------------------
23
Fugue
60.95
19%
-27
* C2 *
2A10
-
CCMK4_SYNY3
A:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
A
V
G
S
-
I
E
T
I
G
F
-------------
P
G
I
-
L
A
A
A
D
A
-----
M
V
K
A
G
-------------------
R
I
T
I
V
G
Y
I
R
A
G
S
A
R
F
T
-----
L
N
I
------
R
G
D
---------------
V
Q
E
V
K
T
A
M
A
-
A
G
I
-
D
--
A
I
-
N
R
T
---
E
G
A
D
V
------
K
T
W
V
I
I
P
R
P
H
E
N
-
V
V
-
A
V
L
P
I
D
------
F
-----------------------------------------
S
P
E
V
--
E
P
F
R
E
A
A
E----------------------------------------------------------------------------------
20
Fugue
60.61
11%
-64
* C5 *
4R29
2
?
A:
[21-220]
---------------------------------------------------------------------------------------------------------------H
V
V
K
N
I
YPEIKHDYFNESPN
I
Y
D
K
K
Y
ISGIT
R
V
A
E
L
K
Q
E
E
F
V
N
E
K
A
R
R
F
S
Y
-
M
K
T
-
M
Y
-------------
S
V
C
-
P
E
A
F
E
P
-----
I
S
R
N
E
AST
P
E
G
S
W
-
L
T
V
I
S
G
K
R
P
M
G
Q
F
S
V
D
-
S
L
Y
N
P
D
L
H
A
-----
L
C
E
------
L
P
D
I
C
C
K
----
I
F
P
K
-
E
N
N
D
F
L
Y
I
V
V
V
-
Y
R
N
-
D
--
S
P
-
L
G
E
---
Q
R
A
-
N
------
R
F
I
E
L
Y
N
I
K
R
D
I
-
M
Q
-
E
L
N
Y
A
L
PEL
K
A
V
K
S
E
M
I
I
A
--
R
----
E
M
G
------
E
-------------
I
F
S
Y
M
P
G
E
I
--
D
S
Y
M
K
Y
I
N
N
K
L-------------------------------------------------------------------------------
7
PsiBlast_PDB
59.48
33%
-26
- C4 -
4ROQ
-
?
A:
[260-313]
--------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
D
L
A
N
E
V
F
T
P
S
E
A
-
E
V
-------------
T
K
A
-
R
R
I
L
E
A
-----
M
E
E
A
A
----
K
A
G
R
-
G
A
V
S
L
D
G
R
L
I
D
I
A
S
I
R
M
A
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
54.73
13%
-77
- C2 -
2ATC
1
PYRI_ECOLI
B:
[1-152]
----------------------------------------------------------------------------------------------------------------------------------------------
M
T
-----
H
N
D
K
L
Q
V
A
E
I
K
R
G
-
T
V
I
-
N
H
--------------------
I
P
A
-----
E
I
G
F
K
----
L
L
S
L
-
F
K
L
T
E
T
Q
D
R
I
T
I
G
L
N
L
P
S
G
E
M
G
R
K
D
L
-----
I
K
I
E
N
T
FLS
E
D
E
V
D
E
L
----
A
L
Y
A
-
P
-
Q
A
T
V
N
R
I
N
D
-
Y
E
V
-
V
--
G
K
-
S
R
P
---
S
L
P
-
E
------
R
N
I
D
V
L
V
C
P
D
S
N
-
C
I
-
S
H
A
E
P
V
------
S
S
S
F
A
V
R
---
R
ADD
I
A
L
------
K
-------------
C
K
Y
C
-
E
K
E
F
S
H
N
V
V
L
A
N
------------------------------------------------------------------------------------
21
Fugue
51.25
15%
-45
- C2 -
1MNM
-
MCM1_YEAST
A:
[15-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-------------
K
E
R
-
R
K
I
E
I
K
-----
F
I
E
N
K
----
T
R
R
H
-
V
T
F
S
K
R
K
H
G
I
M
K
K
A
F
E
L
S
V
L
T
G
T
Q
V
L
-----
L
L
V
------
V
S
E
T
G
---------------
L
V
Y
T
F
S
T
-
P
K
F
-
E
--
P
I
-
V
T
Q
---
Q
E
G
-
R
------
N
L
I
Q
A
C
L
N
A
P
D
D
----------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
45.47
25%
-19
- C4 -
3N2T
-
?
A:
[80-139]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
------
A
T
K
L
G
L
H
----
W
V
G
E
-
D
-
E
K
N
M
K
V
F
R
D
-
S
R
P
-
A
--
R
I
R
K
E
V
---
E
D
S
-
L
------
R
R
L
R
V
E
T
I
D
L
E
Q
-
I
H
-
W
P
D
D
K
T
------
P
I
D
---------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
39.70
33%
21
- C4 -
1NYC
1
SSPC_STAAW
A:
[20-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
E
Q
T
------
N
I
N
L
F
I
G
--
N
----
W
S
N
HQLQ
K
S
I
-------------
C
I
R
H
-
G
D
D
---------------------------------------------------------------------------------------------
22
Fugue
39.69
8%
-34
* C3 *
1E4F
-
?
T:
[7-390]
TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNP
L
D
M
K
A
S
K
I
A
I
E
Y
T
S
I
V
V
P
L
K
-
V
Y
E
-
M
F
-------------
Y
N
F
-
L
Q
D
T
V
K
SPFQL
K
S
S
L
V
----
S
T
A
E
-
G
V
L
T
T
P
E
K
D
R
G
V
V
V
V
N
L
G
Y
N
---
F
T
G
-----
L
I
A
------
Y
K
N
G
V
P
I
----
K
I
S
Y
V
P
-
V
G
M
K
H
V
I
K
D
-
V
S
A
-
V
--
L
D
-
T
S
F
---
E
E
S
-
E
------
R
L
I
I
T
H
G
---
N
A
-
V
Y
-
N
D
L
K
E
E
------
E
I
Q
Y
R
G
L
--
D
----
G
N
T
------
I
-------------
K
T
T
T
-
A
K
K
L
--
S
V
I
I
H
A
RLREIMSKSKKFFREVEAKIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA
26
Fugue
30.29
26%
73
* C4 *
1SY9
-
B:
[5-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
G
F
-------------
R
R
I
-
A
R
L
V
G
V
-----
L
R
E
W
A
----
Y
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
30.17
25%
104
- C4 -
2Y6X
-
PSB27_THEEB
A:
[34-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
K
K
-
A
A
-
Q
A
E
A
R
K
------
K
L
N
D
F
F
A
--
L
----
Y
R
R
------
D
------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.50
14%
243
- C4 -
3EWT
-
E:
[2-14]
------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
I
T
T
I
A
G
V
M
T
L
-
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
26.71
21%
104
- C4 -
2KMF
-
PSB27_SYNY3
A:
[33-56]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
R
Q
-
E
V
-
Q
D
T
A
R
G
------
Q
I
N
D
Y
I
S
--
R
----
Y
R
R
------
K
------------------------------------------------------------------------------------------------------------------