Study : Lmo1520 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

Download fasta file
Download text file


Binding Site Number :C2_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C2_S1
Complex: HIS_A_3(4E51) / Model_6(4E51/A) = [3.1] Download6873.5120.14MDLQLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLSNTKGEK
Complex: CHAIN_F_4(1HTT) / Model_29(1HTT/B) = [3.1] Download--MDLQLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLSNTKGEK
Complex: CHAIN_H_8(1HTT) / Model_27(1HTT/D) = [3.2] Download--MDLQLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLSNTKGEK
Complex: CHAIN_G_6(1HTT) / Model_28(1HTT/C) = [3.4] Download--MDLQLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLSNTKGEK
Complex: CHAIN_E_2(1HTT) / Model_116(1HTT/A) = [3.5] Download--MDLQLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLSNTKGEK
Consensus
[pKd Mean = 3.26]
-6873
(s=0)
20
(s=0)
MDLQLPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLSNTKGEK