Study : Lmo2005 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

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Binding Site Number :C6_S1
Best Complexes choosen after comparative docking [pKd > 3] : 3 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C6_S1
Complex: FLC_A_5(2BP1) / Model_57(2BP1/A) = [3.2] Download799.7333.17MKYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLDEANSRPIIKKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDIVLATKVQQTMRPDRPNSGGLSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGASAMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLASGRLTRDLNETTDRSETDPVQKSKYDDMMNADKGIIERVAELAETHQVSRDKIALAWLLNKDEITSPIIGAQKESHLESAVEALNIKLTTSEVNYLEELYIPHPVVGALPTTK
Complex: FLC_D_8(2BP1) / Model_54(2BP1/D) = [3.2] Download994.9426.79MKYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLDEANSRPIIKKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDIVLATKVQQTMRPDRPNSGGLSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGASAMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLASGRLTRDLNETTDRSETDPVQKSKYDDMMNADKGIIERVAELAETHQVSRDKIALAWLLNKDEITSPIIGAQKESHLESAVEALNIKLTTSEVNYLEELYIPHPVVGALPTTK
Complex: FLC_B_6(2BP1) / Model_56(2BP1/B) = [3.3] Download995.9028.23MKYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLDEANSRPIIKKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDIVLATKVQQTMRPDRPNSGGLSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGASAMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLASGRLTRDLNETTDRSETDPVQKSKYDDMMNADKGIIERVAELAETHQVSRDKIALAWLLNKDEITSPIIGAQKESHLESAVEALNIKLTTSEVNYLEELYIPHPVVGALPTTK
Consensus
[pKd Mean = 3.23]
-930
(s=92)
29
(s=2)
MKYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLDEANSRPIIKKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDIVLATKVQQTMRPDRPNSGGLSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGASAMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLASGRLTRDLNETTDRSETDPVQKSKYDDMMNADKGIIERVAELAETHQVSRDKIALAWLLNKDEITSPIIGAQKESHLESAVEALNIKLTTSEVNYLEELYIPHPVVGALPTTK