@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00072_PDE8A_: (2014-08-21 )
MGCAPSIHISERLVAEDAPSPAAPPLSSGGPRLPQGQKTAALPRTRGAGLLESELRDGSGKKVAVADVQFGPMRFHQDQLQVLLVFTKEDNQCNGFCRACEKAGFKCTVTKEAQAVLACFLDKHHDIIIIDHRNPRQLDAEALCRSIRSSKLSENTVIVGVVRRVDREELSVMPFISAGFTRRYVENPNIMACYNELLQLEFGEVRSQLKLRACNSVFTALENSEDAIEITSEDRFIQYANPAFETTMGYQSGELIGKELGEVPINEKKADLLDTINSCIRIGKEWQGIYYAKKKNGDNIQQNVKIIPVIGQGGKIRHYVSIIRVCNGNNKAEKISECVQSDTHTDNQTGKHKDRRKGSLDVKAVASRATEVSSQRRHSSMARIHSMTIEAPITKVINIINAAQESSPMPVTEALDRVLEILRTTELYSPQFGAKDDDPHANDLVGGLMSDGLRRLSGNEYVLSTKNTQMVSSNIITPISLDDVPPRIARAMENEEYWDFDIFELEAATHNRPLIYLGLKMFARFGICEFLHCSESTLRSWLQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHPGRTNSFLCNAGSELAILYNDTAVLESHHAALAFQLTTGDDKCNIFKNMERNDYRTLRQGIIDMVLATEMTKHFEHVNKFVNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKRMLIKCADVSNPCRPLQYCIEWAARISEEYFSQTDEEKQQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFVDLPDLMQHLDNNFKYWKGLDEMKLRNLRPPPE

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ZAR_A_7(1XOR)
PDE4D_HUMAN
[Raw transfer]



PIL_A_7(1XON)
PDE4D_HUMAN
[Raw transfer]



EV1_A_4(3IAK)

[Raw transfer]



7DE_A_8(1Y2K)
PDE4D_HUMAN
[Raw transfer]



0MO_A_3(3K4S)

[Raw transfer]



5DE_A_7(1Y2E)
PDE4D_HUMAN
[Raw transfer]



CIO_A_8(1XOM)
PDE4D_HUMAN
[Raw transfer]



IBM_B_6(3ECN)

[Raw transfer]



3DE_A_8(1Y2C)
PDE4D_HUMAN
[Raw transfer]



IBM_A_3(3ECN)
PDE8A_HUMAN
[Raw transfer]



DEE_A_8(1Y2B)
PDE4D_HUMAN
[Raw transfer]



EDO_A_19(1Y2D)
PDE4D_HUMAN
[Raw transfer]



ARS_A_7(1F0J)
PDE4B_HUMAN
[Raw transfer]



ARS_A_11(1F0J)
PDE4B_HUMAN
[Raw transfer]



EDO_A_11(1Y2D)
PDE4D_HUMAN
[Raw transfer]
2 PsiBlast_PDB 99.14100%-101 - C2 -3ECN 5.0 PDE8A_HUMAN
21 PsiBlast_CBE 97.82100%-102 - C2 -3ECN 5.0
22 Fugue 71.8134% -80 - C2 -1F0J 2.8 PDE4B_HUMAN
18 PsiBlast_PDB 70.0134% -83 - C2 -3IAK 5.7
12 PsiBlast_PDB 69.6934% -86 - C2 -1XOR 5.0 PDE4D_HUMAN
16 PsiBlast_PDB 68.8434% -85 - C2 -1Y2E 5.7 PDE4D_HUMAN
19 PsiBlast_PDB 68.2734% -82 - C2 -3K4S 4.7
17 PsiBlast_PDB 68.2734% -83 - C2 -1Y2K 5.4 PDE4D_HUMAN
9 PsiBlast_PDB 67.9634% -84 - C2 -1XOM 6.0 PDE4D_HUMAN
10 PsiBlast_PDB 67.9334% -85 - C2 -1XON 6.5 PDE4D_HUMAN
13 PsiBlast_PDB 67.7434% -82 - C2 -1Y2B 3.9 PDE4D_HUMAN
15 PsiBlast_PDB 67.6534% -84 - C2 -1Y2D 3.0 PDE4D_HUMAN
14 PsiBlast_PDB 67.5434% -83 - C2 -1Y2C 5.7 PDE4D_HUMAN
11 PsiBlast_PDB 67.2834% -82 - C2 -1XOQ - PDE4D_HUMAN