@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00072_PDE8B_: (2014-08-21 )
MGCAPSIHVSQSGVIYCRDSDESSSPRQTTSVSQGPAAPLPGLFVQTDAADAIPPSRASGPPSVARVRRARTELGSGSSAGSAAPAATTSRGRRRHCCSSAEAETQTCYTSVKQVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPESALECFLDKHHEIIVIDHRQTQNFDAEAVCRSIRATNPSEHTVILAVVSRVSDDHEEASVLPLLHAGFNRRFMENSSIIACYNELIQIEHGEVRSQFKLRACNSVFTALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKITPVIGQGGKIRHFVSLKKLCCTTDNNKQIHKIHRDSGDNSQTEPHSFRYKNRRKESIDVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITKVINIINAAQENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGLRRLSGNEYVFTKNVHQSHSHLAMPITINDVPPCISQLLDNEESWDFNIFELEAITHKRPLVYLGLKVFSRFGVCEFLNCSETTLRAWFQVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAFQLTVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKPMAAEIEGSDCECNPAGKNFPENQILIKRMMIKCADVANPCRPLDLCIEWAGRISEEYFAQTDEEKRQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFAHLPALMQHLADNYKHWKTLDDLKCKSLRLPSDS

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PIL_A_7(1XON)
PDE4D_HUMAN
[Raw transfer]



ROL_B_8(1XMY)
PDE4B_HUMAN
[Raw transfer]



PIL_A_7(1XM4)
PDE4B_HUMAN
[Raw transfer]



7DE_A_8(1Y2K)
PDE4D_HUMAN
[Raw transfer]



ZAR_A_7(1XOR)
PDE4D_HUMAN
[Raw transfer]



5DE_A_7(1Y2E)
PDE4D_HUMAN
[Raw transfer]



988_A_5(3G45)
PDE4B_HUMAN
[Raw transfer]



CIO_A_8(1XOM)
PDE4D_HUMAN
[Raw transfer]



3DE_A_8(1Y2C)
PDE4D_HUMAN
[Raw transfer]



ROF_A_7(1XMU)
PDE4B_HUMAN
[Raw transfer]



IBM_B_6(3ECN)

[Raw transfer]



DEE_A_8(1Y2B)
PDE4D_HUMAN
[Raw transfer]



IBM_A_3(3ECN)
PDE8A_HUMAN
[Raw transfer]



EDO_A_19(1Y2D)
PDE4D_HUMAN
[Raw transfer]



ARS_A_7(1F0J)
PDE4B_HUMAN
[Raw transfer]



EDO_A_11(1Y2D)
PDE4D_HUMAN
[Raw transfer]



ARS_A_11(1F0J)
PDE4B_HUMAN
[Raw transfer]
2 PsiBlast_PDB 93.7477% -99 - C1 -3ECN 5.0 PDE8A_HUMAN
21 PsiBlast_CBE 92.9977% -98 - C1 -3ECN 5.0
22 Fugue 71.0332% -86 - C1 -1F0J 2.8 PDE4B_HUMAN
16 PsiBlast_PDB 69.5732% -99 - C1 -1XOR 5.0 PDE4D_HUMAN
12 PsiBlast_PDB 69.4635% -93 - C1 -3G45 7.5 PDE4B_HUMAN
34 HHSearch 69.2331% -92 - C1 -1Y2K 5.4 PDE4D_HUMAN
17 PsiBlast_PDB 68.9632% -94 - C1 -1Y2B 3.9 PDE4D_HUMAN
14 PsiBlast_PDB 68.9632% -98 - C1 -1XON 6.5 PDE4D_HUMAN
13 PsiBlast_PDB 68.8232% -94 - C1 -1XOM 6.0 PDE4D_HUMAN
15 PsiBlast_PDB 68.4632% -94 - C1 -1XOQ - PDE4D_HUMAN
18 PsiBlast_PDB 68.4532% -94 - C1 -1Y2C 5.7 PDE4D_HUMAN
19 PsiBlast_PDB 68.3032% -93 - C1 -1Y2D 3.0 PDE4D_HUMAN
20 PsiBlast_PDB 68.0832% -96 - C1 -1Y2E 5.7 PDE4D_HUMAN
6 PsiBlast_PDB 68.0835% -97 - C1 -1XMY 5.7 PDE4B_HUMAN
4 PsiBlast_PDB 66.7835% -94 - C1 -1XM4 7.0 PDE4B_HUMAN
5 PsiBlast_PDB 66.7335% -96 - C1 -1XMU 7.0 PDE4B_HUMAN