@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_GAG_AV: (2014-08-25 )
REEQVTSEQAKFWLGLGGGRVSPPGPECIEKPATERRIDKGEEMGETTVQRDAKMAPEKMATPKTVGTSCYQCGTATGCNCVTASAPPPPYVGSGLYPSLAGAGEQGQGGDTPRGAEQPRAEPGHAGQAPGPALTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPEDTRWLDGKHKRKSSQCLVKSSMSGYIPSCLDKDEQCVVCGDKATGYHYRCITCEGCKSFFRRTIQKNLHPTYSCTYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGSHWKQRRKFLLEDIGQSPMASMLDGDKVDLEAFSEFTKIITPAITRVVDFAKNLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVDKIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHASRFLHMKVECPTELSPQEV

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PFA_D_4(1N46)
THB_HUMAN
[Raw transfer]



PFA_C_3(1N46)
THB_HUMAN
[Raw transfer]



IH5_A_2(1NAX)
THB_HUMAN
[Raw transfer]



T3_F_6(1BSX)
THB_HUMAN
[Raw transfer]



T3_X_8(1XZX)
THB_HUMAN
[Raw transfer]



T3_E_5(1BSX)
THB_HUMAN
[Raw transfer]



T3_E_5(1BSX)
THB_HUMAN
[Raw transfer]



4HY_A_3(3D57)
THB_HUMAN
[Raw transfer]



G24_B_2(1Q4X)
THB_HUMAN
[Raw transfer]



4HY_A_4(2PIN)
THB_HUMAN
[Raw transfer]



OEF_A_2(2J4A)
THB_HUMAN
[Raw transfer]



4HY_A_2(1NQ1)
THB_HUMAN
[Raw transfer]



T44_X_8(1Y0X)
THB_HUMAN
[Raw transfer]



4HY_A_2(1NQ0)
THB_HUMAN
[Raw transfer]



4HY_A_3(1NQ2)
THB_HUMAN
[Raw transfer]



4HY_B_6(2PIN)
THB_HUMAN
[Raw transfer]



CHAIN_B_2(1NQ7)
RORB_RAT
[Raw transfer]
-
CHAIN_B_2(2HC4)
VDRA_DANRE
[Raw transfer]
-
25 Fugue 94.1984%-115 - C1 -1BSX 8.0 THB_HUMAN
2 PsiBlast_PDB 93.8582%-114 - C1 -1XZX 8.5 THB_HUMAN
4 PsiBlast_PDB 93.7482%-115 - C1 -1NQ0 8.3 THB_HUMAN
11 PsiBlast_PDB 93.4983%-110 - C1 -2PIN 8.7 THB_HUMAN
8 PsiBlast_PDB 93.3483%-110 - C1 -2J4A 9.1 THB_HUMAN
6 PsiBlast_PDB 92.6681%-113 - C1 -1NQ1 8.4 THB_HUMAN
21 PsiBlast_CBE 92.5183%-108 - C1 -2PIN 8.4 THB_HUMAN
20 PsiBlast_CBE 92.5082%-123 - C1 -1N46 9.1 THB_HUMAN
10 PsiBlast_PDB 92.4083%-111 - C1 -1NAX 8.4 THB_HUMAN
3 PsiBlast_PDB 92.2682%-112 - C1 -1Y0X 8.4 THB_HUMAN
5 PsiBlast_PDB 92.0881%-108 - C1 -1NQ2 7.2 THB_HUMAN
9 PsiBlast_PDB 91.9283%-116 - C1 -1Q4X 9.0 THB_HUMAN
12 PsiBlast_PDB 91.4783%-113 - C1 -3D57 8.7 THB_HUMAN
19 PsiBlast_CBE 91.1282%-115 - C1 -1BSX 8.0 THB_HUMAN
7 PsiBlast_PDB 90.8182%-107 - C1 -1N46 9.2 THB_HUMAN