@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARA_: (2014-08-26 )
MVDTESPICPLSPLEADDLESPLSEEFLQEMGNIQEISQSLGEESSGSFSFADYQYLGSCPGSEGSVITDTLSPASSPSSVSCPAVPTSTDESPGNALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLAYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDLKDSETADLKSLAKRIHEAYLKNFNMNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVENKEAEVRFFHCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIEKLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]




MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]




S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]




MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]




735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]




13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]




RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]




ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]




CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]




ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]




CHAIN_H_8(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]




WY1_B_6(4BCR)
PPARA_HUMAN
[Raw transfer]




WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]




ET1_A_3(3ET2)
PPARD_HUMAN
[Raw transfer]




471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]




GW0_A_2(3TKM)
PPARD_HUMAN
[Raw transfer]




471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]




08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]




471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]




Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]




WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]




PLB_D_12(3DZU)
PPARG_HUMAN
[Raw transfer]




GW9_D_12(3E00)
PPARG_HUMAN
[Raw transfer]




NACID_C_1(1A6Y)
NR1D1_HUMAN
[Raw transfer]

-

NACID_B_1(2A66)
NR5A2_HUMAN
[Raw transfer]

-

NACID_C_1(1DSZ)

[Raw transfer]

-

CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

NACID_C_1(2HAN)

[Raw transfer]

-

CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

CHAIN_G_7(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

9 PsiBlast_PDB 97.0163%-124 - C2 -3E00 4.2 PPARG_HUMAN
8 PsiBlast_PDB 94.1563%-128 - C2 -3DZU 4.5 PPARG_HUMAN
28 PsiBlast_CBE 91.3092%-142 - C2 -2NPA 7.7 PPARA_HUMAN
27 PsiBlast_CBE 91.2092%-138 - C2 -3ET1 5.7 PPARA_HUMAN
5 PsiBlast_PDB 90.6792%-139 - C2 -3SP6 6.4 PPARA_HUMAN
14 PsiBlast_PDB 90.3592%-141 - C2 -2P54 7.8 PPARA_HUMAN
10 PsiBlast_PDB 89.9192%-133 - C2 -2NPA 8.0 PPARA_HUMAN
7 PsiBlast_PDB 89.1492%-140 - C2 -3ET1 6.8 PPARA_HUMAN
26 PsiBlast_CBE 89.1092%-143 - C2 -4BCR 5.8 PPARA_HUMAN
4 PsiBlast_PDB 88.0192%-141 - C2 -4BCR 5.0 PPARA_HUMAN
13 PsiBlast_PDB 87.8692%-139 - C2 -3VI8 10.7 PPARA_HUMAN
15 PsiBlast_PDB 87.8192%-147 - C2 -3FEI 7.4 PPARA_HUMAN
12 PsiBlast_PDB 87.4092%-139 - C2 -2ZNN 10.7 PPARA_HUMAN
6 PsiBlast_PDB 87.4092%-147 - C2 -3G8I 9.2 PPARA_HUMAN
29 PsiBlast_CBE 86.3492%-133 - C2 -1KKQ 11.1 PPARA_HUMAN
30 PsiBlast_CBE 86.0692%-136 - C2 -1KKQ 10.3 PPARA_HUMAN
31 PsiBlast_CBE 85.8092%-139 - C2 -1KKQ 7.6 PPARA_HUMAN
11 PsiBlast_PDB 85.4492%-136 - C2 -1KKQ 7.3 PPARA_HUMAN
20 PsiBlast_PDB 83.3967%-139 - C2 -3TKM 6.2 PPARD_HUMAN
17 PsiBlast_PDB 82.1366%-142 - C2 -2XYW 9.0 PPARD_HUMAN
19 PsiBlast_PDB 81.9166%-140 - C2 -3ET2 6.3 PPARD_HUMAN
18 PsiBlast_PDB 81.6366%-142 - C2 -2XYX 7.2 PPARD_HUMAN
16 PsiBlast_PDB 81.3666%-130 - C2 -2XYJ 5.8 PPARD_HUMAN
68 HHSearch 28.2550% -87 - C2 -1CIT -
53 HHSearch 28.1258% -68 - C2 -1A6Y 5.5 NR1D1_HUMAN
58 HHSearch 28.0753% -86 - C2 -1DSZ -
63 HHSearch 27.8751% -79 - C2 -2A66 4.9 NR5A2_HUMAN
64 HHSearch 27.8554% -83 - C2 -2HAN 7.0
61 HHSearch 27.8154% -85 - C2 -1DSZ 5.1
62 HHSearch 27.3050% -75 - C2 -3CBB - HNF4A_HUMAN