@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00112_PEPT1_: (2014-08-28 )
MKIVLAIASLLALSAVYARPSSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_6(1XKG)
PEPT1_DERPT
[Raw transfer]




NBL_B_2(1YK7)
CATK_HUMAN
[Raw transfer]




750_A_3(1NL6)
CATK_HUMAN
[Raw transfer]




E64_A_5(3H7D)
CATK_HUMAN
[Raw transfer]




FSP_A_6(1TU6)
CATK_HUMAN
[Raw transfer]




2CA_A_3(1NLJ)
CATK_HUMAN
[Raw transfer]




CKE_A_2(2R6N)
CATK_HUMAN
[Raw transfer]




IHE_A_2(1U9V)
CATK_HUMAN
[Raw transfer]




IHI_A_2(1U9W)
CATK_HUMAN
[Raw transfer]




IHJ_A_2(1U9X)
CATK_HUMAN
[Raw transfer]




TCO_A_3(1Q6K)
CATK_HUMAN
[Raw transfer]




KWZ_A_8(3KWZ)
CATK_HUMAN
[Raw transfer]




BNS_B_3(1MEM)
CATK_HUMAN
[Raw transfer]




BZP_B_2(1MEM)
CATK_HUMAN
[Raw transfer]




CHAIN_C_3(1S4V)
CYSEP_RICCO
[Raw transfer]

-

1 PsiBlast_PDB 98.8999%-100 - C1 -1XKG 3.3 PEPT1_DERPT
44 HHSearch 58.9934% -98 * C1 *3KWZ 2.7 CATK_HUMAN
13 PsiBlast_PDB 57.9435% -88 - C1 -2R6N 5.7 CATK_HUMAN
11 PsiBlast_PDB 57.7335% -90 - C1 -1U9W 3.7 CATK_HUMAN
12 PsiBlast_PDB 57.5235% -90 - C1 -1U9X 4.2 CATK_HUMAN
20 PsiBlast_PDB 57.4535% -89 - C1 -1YK7 3.5 CATK_HUMAN
18 PsiBlast_PDB 57.1735% -92 - C1 -1Q6K 3.7 CATK_HUMAN
17 PsiBlast_PDB 56.9735% -88 - C1 -1NLJ 4.8 CATK_HUMAN
19 PsiBlast_PDB 56.7535% -90 - C1 -1TU6 4.8 CATK_HUMAN
16 PsiBlast_PDB 56.7335% -84 - C1 -1NL6 6.9 CATK_HUMAN
56 HHSearch 56.5733% -98 - C1 -1S4V 3.4 CYSEP_RICCO
10 PsiBlast_PDB 56.4335% -88 - C1 -1U9V 3.3 CATK_HUMAN
15 PsiBlast_PDB 56.1735% -89 - C1 -1MEM 4.0 CATK_HUMAN
14 PsiBlast_PDB 56.1335% -86 - C1 -3H7D 2.6 CATK_HUMAN