@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00233_PDE5A_: (2014-09-02 )
MLPFGDKTRDMVNAWFSERVHNIPVCKEGIRAHTESCSCSLPQSPHADNTTPGAPARKISASEFDRPLRPIVVKDSEGTVSFLSDSGKKEQMPLTSPRFDSDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSKDKFLVSRLFDVAEGSTLEEASNNCIRLEWNKGIVGHVAAFGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCPDSFSRVFQMEWEEVGKSSEPLTREHDANKINYMYAQYVKNTMEPLNIPDVTKDNRFPWTNENMGHINTHCIRSLLCTPIKNGKKNKVIGVCQLVNKMEEKTGKIKAFNQNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQALAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLETLALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSTMEHHHFDQCLMVLNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNEFSFEDPLQKELFLAMLMTACDLSAITKPWPIQQRIAELVAAEFFDQGDRERKELNMEPADLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCLPLLDGCRKNRQKWQALADQQEKTLLNGESGQAKRD

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VIA_A_4(1TBF)

[Raw transfer]




VIA_C_12(2H42)

[Raw transfer]




VIA_A_10(2H42)
PDE5A_HUMAN
[Raw transfer]




VDN_A_4(1XP0)

[Raw transfer]




VDN_A_4(1UHO)

[Raw transfer]




VIA_A_4(1UDT)

[Raw transfer]




VDN_B_4(3B2R)

[Raw transfer]




VDN_A_3(3B2R)
PDE5A_HUMAN
[Raw transfer]




NI0_A_2(4G2W)

[Raw transfer]




5EO_A_2(3TSE)

[Raw transfer]




WAN_A_4(3BJC)
PDE5A_HUMAN
[Raw transfer]




WAN_A_4(3BJC)
PDE5A_HUMAN
[Raw transfer]




5BO_A_3(3SIE)
PDE5A_HUMAN
[Raw transfer]




NI5_A_5(4G2Y)

[Raw transfer]




5FO_A_2(3SHY)

[Raw transfer]




5IO_A_2(3TSF)

[Raw transfer]




GOL_A_5(1TBF)

[Raw transfer]




5BB_A_2(4IA0)

[Raw transfer]




5CO_A_2(3SHZ)

[Raw transfer]




5BO_B_4(3SIE)

[Raw transfer]




VIA_B_11(2H42)
PDE5A_HUMAN
[Raw transfer]




3P4_A_4(2CHM)

[Raw transfer]




IBM_A_4(1RKP)

[Raw transfer]




TGE_A_4(3TGE)

[Raw transfer]




PD4_A_2(3HC8)

[Raw transfer]




7CA_A_4(2H44)

[Raw transfer]




0H3_A_4(3TGG)

[Raw transfer]




CIA_A_4(1XOZ)

[Raw transfer]




PD6_A_2(3HDZ)

[Raw transfer]




5GP_A_7(1T9S)
PDE5A_HUMAN
[Raw transfer]




IBM_B_12(3JWR)

[Raw transfer]




5GP_B_8(1T9S)

[Raw transfer]




CIA_A_7(1UDU)
PDE5A_HUMAN
[Raw transfer]




CIA_B_8(1UDU)

[Raw transfer]




IBM_A_7(3JWR)
PDE5A_HUMAN
[Raw transfer]




CMP_A_5(2OUR)
PDE10_HUMAN
[Raw transfer]




CHAIN_D_4(3JWR)

[Raw transfer]

-

CHAIN_C_3(3JWR)
PDE5A_HUMAN
[Raw transfer]

-

PEG_A_4(4G2W)

[Raw transfer]




PEG_A_2(4G2Y)

[Raw transfer]




8 PsiBlast_PDB 75.6196%-127 - C3 -3B2R 7.8 PDE5A_HUMAN
24 PsiBlast_CBE 75.3796%-123 - C3 -3SIE 6.2
23 PsiBlast_CBE 74.7496%-126 - C3 -3B2R 7.6
11 PsiBlast_PDB 73.6996%-121 - C3 -3SIE 7.5 PDE5A_HUMAN
15 PsiBlast_PDB 73.4196%-123 - C3 -4G2Y 7.3
7 PsiBlast_PDB 73.2196%-113 - C3 -2H44 11.1
12 PsiBlast_PDB 73.1596%-119 - C3 -3TSE 6.5
13 PsiBlast_PDB 73.1496%-123 - C3 -3TSF 7.7
20 PsiBlast_PDB 73.0895%-115 - C3 -1UHO 7.9
6 PsiBlast_PDB 72.7996%-111 - C3 -2H42 7.5 PDE5A_HUMAN
21 PsiBlast_CBE 72.5396%-112 - C3 -2H42 7.8
10 PsiBlast_PDB 72.4796%-119 - C3 -3SHZ 6.4
37 PsiBlast_CBE 72.3590%-112 - C3 -3TGG 8.9
9 PsiBlast_PDB 72.3496%-118 - C3 -3SHY 6.9
18 PsiBlast_PDB 72.2695%-114 - C3 -1UDT 7.7
14 PsiBlast_PDB 72.2096%-121 - C3 -4G2W 7.4
17 PsiBlast_PDB 72.0195%-116 - C3 -1RKP 5.6
41 PsiBlast_CBE 71.9890%-111 - C3 -3HC8 8.4
27 PsiBlast_CBE 71.9689%-109 - C3 -1XOZ 8.5
16 PsiBlast_PDB 71.8796%-123 - C3 -4IA0 8.4
36 PsiBlast_CBE 71.8690%-109 - C3 -1T9S 4.5 PDE5A_HUMAN
52 HHSearch 71.7993%-116 - C3 -3BJC 6.5 PDE5A_HUMAN
22 PsiBlast_CBE 71.7596%-109 - C3 -2H42 7.1 PDE5A_HUMAN
26 PsiBlast_CBE 71.4689%-108 - C3 -1XP0 8.2
34 PsiBlast_CBE 71.3690%-108 - C3 -1TBF 7.2
38 PsiBlast_CBE 71.3590%-110 - C3 -3TGE 7.9
35 PsiBlast_CBE 71.1590%-107 - C3 -1T9S 4.6
40 PsiBlast_CBE 70.6390%-108 - C3 -3HDZ 7.7
39 PsiBlast_CBE 70.4990%-108 - C3 -2CHM 8.5
25 PsiBlast_CBE 70.1795%-114 - C3 -1UDU 8.3
19 PsiBlast_PDB 69.6195%-113 - C3 -1UDU 8.4 PDE5A_HUMAN
29 PsiBlast_CBE 69.5689%-106 - C3 -3JWR 4.8 PDE5A_HUMAN (first)
28 PsiBlast_CBE 69.5389%-107 - C3 -3JWR 4.9
57 HHSearch 54.1538% -96 - C3 -2OUR 4.5 PDE10_HUMAN