@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00233_PDE9A_: (2014-09-02 )
MGSGSSSYRPKAIYLDIDGRIQKVIFSKYCNSSDIMDLFCIATGLPRNTTISLLTTDDAMVSIDPTMPANSERTPYKVRPVAIKQLSAGVEDKRTTSRGQSAERPLRDRRVVGLEQPRREGAFESGQVEPRPREPQGCYQEGQRIPPEREELIQSVLAQVAEQFSRAFKINELKAEVANHLAVLEKRVELEGLKVVEIEKCKSDIKKMREELAARSSRTNCPCKYSFLDNHKKLTPRRDVPTYPKYLLSPETIEALRKPTFDVWLWEPNEMLSCLEHMYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAMKELQKKTDSLTSGATEKSRERSRDVKNSEGDCA

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

7RG_B_8(4E90)
PDE9A_HUMAN
[Raw transfer]




WTC_B_8(3JSI)
PDE9A_HUMAN
[Raw transfer]




7RG_A_5(4E90)
PDE9A_HUMAN
[Raw transfer]




WTC_A_5(3JSI)
PDE9A_HUMAN
[Raw transfer]




JAR_A_5(3JSW)
PDE9A_HUMAN
[Raw transfer]




0WF_A_5(4G2J)
PDE9A_HUMAN
[Raw transfer]




PCG_A_7(3DYQ)
PDE9A_HUMAN
[Raw transfer]




0WF_B_8(4G2J)
PDE9A_HUMAN
[Raw transfer]




0WL_B_8(4G2L)
PDE9A_HUMAN
[Raw transfer]




5GP_A_9(3DYS)
PDE9A_HUMAN
[Raw transfer]




LUO_B_6(4GH6)
PDE9A_HUMAN
[Raw transfer]




0WL_A_5(4G2L)
PDE9A_HUMAN
[Raw transfer]




JAR_B_8(3JSW)
PDE9A_HUMAN
[Raw transfer]




PCG_A_7(3DYL)
PDE9A_HUMAN
[Raw transfer]




PCG_A_7(3DYN)
PDE9A_HUMAN
[Raw transfer]




5GP_A_7(3DY8)
PDE9A_HUMAN
[Raw transfer]




PCG_B_9(3DYN)
PDE9A_HUMAN
[Raw transfer]




LUO_A_3(4GH6)
PDE9A_HUMAN
[Raw transfer]




PDB_A_3(3QI3)
PDE9A_HUMAN
[Raw transfer]




FMT_B_9(3DY8)
PDE9A_HUMAN
[Raw transfer]




PDB_A_3(3QI3)
PDE9A_HUMAN
[Raw transfer]




IBM_A_3(3QI4)
PDE9A_HUMAN
[Raw transfer]




IBM_A_7(2HD1)
PDE9A_HUMAN
[Raw transfer]




IBM_A_3(3N3Z)
PDE9A_HUMAN
[Raw transfer]




FMT_B_11(3DYS)
PDE9A_HUMAN
[Raw transfer]




FMT_B_9(3DYL)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(3N3Z)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(3DYL)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(2HD1)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(3DYN)
PDE9A_HUMAN
[Raw transfer]




IBM_B_10(3DYS)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(2YY2)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(3DY8)
PDE9A_HUMAN
[Raw transfer]




IBM_B_8(3DYQ)
PDE9A_HUMAN
[Raw transfer]




IBM_B_6(3QI4)
PDE9A_HUMAN
[Raw transfer]




7DE_A_8(1Y2K)
PDE4D_HUMAN
[Raw transfer]




IBM_A_7(2YY2)
PDE9A_HUMAN
[Raw transfer]




IBM_A_7(2R8Q)
?
[Raw transfer]




PDB_B_6(3QI3)
PDE9A_HUMAN
[Raw transfer]




LUO_B_7(4GH6)
PDE9A_HUMAN
[Raw transfer]




7 PsiBlast_PDB 98.97100%-139 - C5 -4GH6 6.5 PDE9A_HUMAN
29 PsiBlast_CBE 98.72100%-137 - C5 -4G2L 7.0 PDE9A_HUMAN
24 PsiBlast_CBE 98.48100%-139 - C5 -4GH6 6.7 PDE9A_HUMAN
3 PsiBlast_PDB 98.45100%-140 - C5 -2YY2 4.7 PDE9A_HUMAN
8 PsiBlast_PDB 98.4499%-141 - C5 -3N3Z 4.3 PDE9A_HUMAN
4 PsiBlast_PDB 98.32100%-138 - C5 -2HD1 4.6 PDE9A_HUMAN
27 PsiBlast_CBE 98.30100%-142 - C5 -2HD1 4.2 PDE9A_HUMAN
35 PsiBlast_CBE 98.29100%-139 - C5 -3DYQ 4.4 PDE9A_HUMAN
14 PsiBlast_PDB 98.28100%-140 - C5 -3JSI 7.0 PDE9A_HUMAN
13 PsiBlast_PDB 98.10100%-140 - C5 -3DYS 5.0 PDE9A_HUMAN
33 PsiBlast_CBE 98.06100%-140 - C5 -3JSI 7.0 PDE9A_HUMAN
18 PsiBlast_PDB 98.04100%-141 - C5 -4G2L 6.6 PDE9A_HUMAN
9 PsiBlast_PDB 98.01100%-140 - C5 -3DY8 4.4 PDE9A_HUMAN
30 PsiBlast_CBE 98.00100%-140 - C5 -4G2J 7.1 PDE9A_HUMAN
32 PsiBlast_CBE 97.87100%-141 - C5 -3JSW 7.5 PDE9A_HUMAN
28 PsiBlast_CBE 97.8399%-139 - C5 -3N3Z 4.4 PDE9A_HUMAN
34 PsiBlast_CBE 97.79100%-138 - C5 -3DYS 4.5 PDE9A_HUMAN
15 PsiBlast_PDB 97.78100%-141 - C5 -3JSW 7.2 PDE9A_HUMAN
16 PsiBlast_PDB 97.77100%-141 - C5 -4E90 7.4 PDE9A_HUMAN
37 PsiBlast_CBE 97.69100%-142 - C5 -3DYL 4.6 PDE9A_HUMAN
17 PsiBlast_PDB 97.65100%-141 - C5 -4G2J 8.3 PDE9A_HUMAN
36 PsiBlast_CBE 97.54100%-137 - C5 -3DYN 4.3 PDE9A_HUMAN
50 HHSearch 97.5299%-140 - C5 -3DYN 5.0 PDE9A_HUMAN
49 HHSearch 97.51100%-140 - C5 -3QI3 5.8 PDE9A_HUMAN
38 PsiBlast_CBE 97.49100%-138 - C5 -3DY8 4.3 PDE9A_HUMAN
10 PsiBlast_PDB 97.47100%-140 - C5 -3DYL 4.6 PDE9A_HUMAN
31 PsiBlast_CBE 97.45100%-139 - C5 -4E90 7.5 PDE9A_HUMAN
12 PsiBlast_PDB 97.12100%-139 - C5 -3DYQ 4.6 PDE9A_HUMAN
23 PsiBlast_CBE 96.85100%-139 - C5 -2YY2 4.7 PDE9A_HUMAN
2 PsiBlast_PDB 94.9684%-139 - C5 -3QI4 4.6 PDE9A_HUMAN
21 PsiBlast_CBE 94.6784%-136 - C5 -3QI4 4.5 PDE9A_HUMAN
22 PsiBlast_CBE 94.5184%-137 - C5 -3QI3 5.4 PDE9A_HUMAN
53 HHSearch 75.6830%-107 - C5 -1F0J - PDE4B_HUMAN
54 HHSearch 75.6231%-123 - C5 -1Y2K 3.4 PDE4D_HUMAN
63 HHSearch 70.4230%-121 - C5 -2R8Q 3.6 ?