@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00413_MMP11_: (2014-09-06 )
MAPAAWLRSAAARALLPPMLLLLLQPPPLLARALPPDAHHLHAERRGPQPWHAALPSSPAPAPATQEAPRPASSLRPPRCGVPDPSDGLSARNRQKRFVLSGGRWEKTDLTYRILRFPWQLVQEQVRQTMAEALKVWSDVTPLTFTEVHEGRADIMIDFARYWHGDDLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDDQGTDLLQVAAHEFGHVLGLQHTTAAKALMSAFYTFRYPLSLSPDDCRGVQHLYGQPWPTVTSRTPALGPQAGIDTNEIAPLEPDAPPDACEASFDAVSTIRGELFFFKAGFVWRLRGGQLQPGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPLTELGLVRFPVHAALVWGPEKNKIYFFRGRDYWRFHPSTRRVDSPVPRRATDWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCAEPANTFL

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]




RXP_F_(1HV5)
MMP11_MOUSE
[Raw transfer]




RXP_F_(1HV5)
MMP11_MOUSE
[Raw transfer]




347_A_23(2PJT)
MMP13_HUMAN
[Raw transfer]




LA3_A_11(3LJZ)
MMP13_HUMAN
[Raw transfer]




BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]




HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]




FA4_A_15(2D1N)
MMP13_HUMAN
[Raw transfer]




BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]




033_A_25(1ZTQ)
MMP13_HUMAN
[Raw transfer]




GOL_A_9(4IN9)
?
[Raw transfer]




GOL_A_8(4IN9)
?
[Raw transfer]




HAE_A_17(2OW9)
MMP13_HUMAN
[Raw transfer]




HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]




CPS_A_25(1HV5)
MMP11_MOUSE
[Raw transfer]




CPS_A_25(1HV5)
MMP11_MOUSE
[Raw transfer]




HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]




CPS_B_26(1HV5)
MMP11_MOUSE
[Raw transfer]




CHAIN_B_2(4IN9)
?
[Raw transfer]

-

CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]

-

CHAIN_C_3(4FVL)
?
[Raw transfer]

-

CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]

-

7 PsiBlast_PDB 81.1137%-116 - C2 -4FVL 7.6 ?
8 PsiBlast_PDB 79.3537%-113 - C2 -4G0D 7.3 MMP13_HUMAN
5 PsiBlast_PDB 76.8438%-107 - C2 -1FBL 5.5 MMP1_PIG
38 HHSearch 76.7337%-107 - C2 -3BA0 2.3 MMP12_HUMAN
50 HHSearch 55.1894%-107 - C2 -1HV5 3.9 MMP11_MOUSE
25 PsiBlast_CBE 55.1893%-105 - C2 -1HV5 3.8 MMP11_MOUSE
21 PsiBlast_CBE 52.5093%-101 - C2 -1HV5 10.3 MMP11_MOUSE
20 PsiBlast_PDB 42.5050%-104 - C2 -3LJZ 10.2 MMP13_HUMAN
14 PsiBlast_PDB 42.0250%-104 - C2 -2OW9 4.5 MMP13_HUMAN
16 PsiBlast_PDB 42.0150%-106 - C2 -2D1N 7.9 MMP13_HUMAN
51 HHSearch 41.6045%-102 - C2 -1RM8 6.9 MMP16_HUMAN
17 PsiBlast_PDB 41.5550%-102 - C2 -1ZTQ 7.1 MMP13_HUMAN
54 HHSearch 41.2049% -98 - C2 -3AYU 6.9 MMP2_HUMAN
60 HHSearch 41.1648% -99 * C2 *1I76 7.6 MMP8_HUMAN
19 PsiBlast_PDB 40.7150%-101 - C2 -2PJT 6.3 MMP13_HUMAN
53 HHSearch 39.1044% -99 - C2 -4IN9 6.8 ?
52 HHSearch 38.8246% -93 - C2 -4H1Q 8.7 MMP9_HUMAN