@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00536_EPHB2_: (2014-09-11 )
MALRRLGAALLLLPLLAAVEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDSATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRSGFYLAFQDYGGCMSLIAVRVFYRKCPRIIQNGAIFQETLSGAESTSLVAARGSCIANAEEVDVPIKLYCNGDGEWLVPIGRCMCKAGFEAVENGTVCRGCPSGTFKANQGDEACTHCPINSRTTSEGATNCVCRNGYYRADLDPLDMPCTTIPSAPQAVISSVNETSLMLEWTPPRDSGGREDLVYNIICKSCGSGRGACTRCGDNVQYAPRQLGLTEPRIYISDLLAHTQYTFEIQAVNGVTDQSPFSPQFASVNITTNQAAPSAVSIMHQVSRTVDSITLSWSQPDQPNGVILDYELQYYEKELSEYNATAIKSPTNTVTVQGLKAGAIYVFQVRARTVAGYGRYSGKMYFQTMTEAEYQTSIQEKLPLIIGSSAAGLVFLIAVVVIAIVCNRRGFERADSEYTDKLQHYTSGHMTPGMKIYIDPFTYEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNPNSLKAMAPLSSGINLPLLDRTIPDYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQSVEV

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AS6_A_2(2XVD)

[Raw transfer]




7X6_A_2(2VWZ)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




STU_A_2(1U59)

[Raw transfer]




ANP_A_4(3FXX)

[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




ANP_A_3(3KEX)
ERBB3_HUMAN
[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




STU_A_5(3CD3)

[Raw transfer]




PP1_B_2(1QCF)
HCK_HUMAN
[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




H8H_A_2(2H8H)
SRC_HUMAN
[Raw transfer]




CHAIN_B_2(3CBL)

[Raw transfer]

-

1 PsiBlast_PDB 77.1899%-111 - C2 -1JPA 4.1 EPHB2_MOUSE
21 PsiBlast_CBE 77.1099%-111 - C2 -1JPA 4.2
3 PsiBlast_PDB 74.7499%-113 - C2 -2HEN 4.7 EPHB2_MOUSE
24 PsiBlast_CBE 74.4099%-111 - C2 -2HEN 5.5 EPHB2_MOUSE
23 PsiBlast_CBE 74.2899%-109 - C2 -2HEN 5.1 EPHB2_MOUSE
22 PsiBlast_CBE 74.2799%-112 - C2 -2HEN 5.7
28 PsiBlast_CBE 73.8482%-112 - C2 -2VX1 7.3
30 PsiBlast_CBE 73.5182%-107 - C2 -2VWZ 7.5
31 PsiBlast_CBE 73.4782%-108 - C2 -2VWY 6.8
27 PsiBlast_CBE 73.3682%-112 - C2 -2X9F 6.6
32 PsiBlast_CBE 73.2982%-109 - C2 -2VWX 6.3
14 PsiBlast_PDB 72.9669%-109 - C2 -3FXX 4.4
41 PsiBlast_CBE 72.9383%-120 - C2 -2XYU 7.0
25 PsiBlast_CBE 72.8882%-115 - C2 -4BB4 6.7
38 PsiBlast_CBE 72.8683%-115 - C2 -2Y6M 2.6
29 PsiBlast_CBE 72.7882%-109 - C2 -2VX0 7.4
37 PsiBlast_CBE 72.6283%-118 - C2 -2Y6O 7.4
26 PsiBlast_CBE 72.5982%-109 - C2 -2XVD 7.1
39 PsiBlast_CBE 72.4884%-113 - C2 -4AW5 7.6
35 PsiBlast_CBE 72.1782%-108 - C2 -3DKO 8.4
33 PsiBlast_CBE 71.6784%-117 - C2 -2YN8 8.7
13 PsiBlast_PDB 70.8169%-110 - C2 -2QO9 4.5
34 PsiBlast_CBE 69.9884%-118 - C2 -2YN8 8.6 EPHB4_HUMAN
64 HHSearch 67.6169%-110 * C2 *1MQB 4.2 EPHA2_HUMAN
63 HHSearch 65.9968%-110 - C2 -3KUL 3.0 EPHA8_HUMAN
47 Fugue 64.6732% -91 - C2 -3CD3 8.8
65 HHSearch 57.4139% -94 - C2 -3CBL 8.6
69 HHSearch 56.0444%-106 - C2 -1QCF 6.5 HCK_HUMAN
74 HHSearch 55.8446%-102 - C2 -2H8H 7.3 SRC_HUMAN
68 HHSearch 55.0338% -95 - C2 -3POZ 10.6
73 HHSearch 54.9041% -98 - C2 -1U59 5.8
71 HHSearch 50.6732% -87 - C2 -3KEX 5.0 ERBB3_HUMAN