@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00536_EPHB3_: (2014-09-11 )
MARARPPPPPSPPPGLLPLLPPLLLLPLLLLPAGCRALEETLMDTKWVTSELAWTSHPESGWEEVSGYDEAMNPIRTYQVCNVRESSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNIPGSCKETFNLFYYEADSDVASASSPFWMENPYVKVDTIAPDESFSRLDAGRVNTKVRSFGPLSKAGFYLAFQDQGACMSLISVRAFYKKCASTTAGFALFPETLTGAEPTSLVIAPGTCIPNAVEVSVPLKLYCNGDGEWMVPVGACTCATGHEPAAKESQCRPCPPGSYKAKQGEGPCLPCPPNSRTTSPAASICTCHNNFYRADSDSADSACTTVPSPPRGVISNVNETSLILEWSEPRDLGGRDDLLYNVICKKCHGAGGASACSRCDDNVEFVPRQLGLTERRVHISHLLAHTRYTFEVQAVNGVSGKSPLPPRYAAVNITTNQAAPSEVPTLRLHSSSGSSLTLSWAPPERPNGVILDYEMKYFEKSEGIASTVTSQMNSVQLDGLRPDARYVVQVRARTVAGYGQYSRPAEFETTSERGSGAQQLQEQLPLIVGSATAGLVFVVAVVVIAIVCLRKQRHGSDSEYTEKLQQYIAPGMKVYIDPFTYEDPNEAVREFAKEIDVSCVKIEEVIGAGEFGEVCRGRLKQPGRREVFVAIKTLKVGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMILTEFMENCALDSFLRLNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDPSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAVEQDYRLPPPMDCPTALHQLMLDCWVRDRNLRPKFSQIVNTLDKLIRNAASLKVIASAQSGMSQPLLDRTVPDYTTFTTVGDWLDAIKMGRYKESFVSAGFASFDLVAQMTAEDLLRIGVTLAGH

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C07_A_2(4G2F)

[Raw transfer]




7X6_A_2(2VWZ)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




ANP_D_4(1MQB)

[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




IFC_A_2(3DZQ)

[Raw transfer]




ANP_A_2(4FL3)
KSYK_HUMAN
[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




STU_A_2(1U59)

[Raw transfer]




ANP_A_4(3FXX)

[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




STU_A_5(3CD3)

[Raw transfer]




PP1_B_2(1QCF)
HCK_HUMAN
[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




CHAIN_B_2(3CD3)

[Raw transfer]

-

CHAIN_B_2(3CBL)

[Raw transfer]

-

21 PsiBlast_CBE 75.8386%-118 - C1 -1JPA 4.2
17 PsiBlast_PDB 75.2485%-118 - C1 -2VX1 7.1
2 PsiBlast_PDB 75.1086%-116 - C1 -1JPA 4.1 EPHB2_MOUSE
13 PsiBlast_PDB 74.9185%-116 - C1 -2VWX 6.4
18 PsiBlast_PDB 74.6085%-119 - C1 -2X9F 6.6
15 PsiBlast_PDB 74.4885%-112 - C1 -2VWZ 7.5
14 PsiBlast_PDB 74.4785%-114 - C1 -2VWY 6.6
20 PsiBlast_PDB 74.4085%-122 - C1 -4BB4 6.9
19 PsiBlast_PDB 73.9085%-116 - C1 -2XVD 6.8
16 PsiBlast_PDB 73.7985%-116 - C1 -2VX0 7.3
7 PsiBlast_PDB 73.0472%-111 - C1 -3FXX 4.1
27 PsiBlast_CBE 72.9986%-117 - C1 -2HEN 4.6 EPHB2_MOUSE
34 PsiBlast_CBE 72.8386%-118 - C1 -4AW5 7.3
22 PsiBlast_CBE 72.4187%-125 - C1 -2YN8 8.2
26 PsiBlast_CBE 72.1086%-116 - C1 -2HEN 5.4 EPHB2_MOUSE
25 PsiBlast_CBE 72.0286%-113 - C1 -2HEN 5.1 EPHB2_MOUSE
24 PsiBlast_CBE 71.7386%-116 - C1 -2HEN 5.7
38 PsiBlast_CBE 71.6881%-119 - C1 -2Y6M 2.6
23 PsiBlast_CBE 71.6787%-127 - C1 -2YN8 8.5 EPHB4_HUMAN
37 PsiBlast_CBE 71.5981%-122 - C1 -2Y6O 7.6
28 PsiBlast_CBE 71.5072%-114 - C1 -2QOC 4.6
35 PsiBlast_CBE 71.4579%-111 - C1 -3DKO 8.4
6 PsiBlast_PDB 71.0972%-114 - C1 -2QO9 4.0
40 PsiBlast_CBE 70.5781%-126 - C1 -2XYU 7.1
33 PsiBlast_CBE 70.2172%-117 - C1 -3DZQ 10.7
32 PsiBlast_CBE 70.0272%-114 - C1 -4G2F 5.8
62 HHSearch 67.8370%-113 - C1 -3KUL 2.8 EPHA8_HUMAN
41 PsiBlast_CBE 67.6171%-115 - C1 -1MQB 4.2
42 PsiBlast_CBE 67.1971%-115 - C1 -1MQB 4.3 EPHA2_HUMAN
45 Fugue 61.8035% -95 - C1 -3CD3 8.9
74 HHSearch 61.0937%-109 - C1 -4FL3 6.2 KSYK_HUMAN
64 HHSearch 57.1542% -99 - C1 -3CBL 8.7
68 HHSearch 55.3943%-108 - C1 -1QCF 6.6 HCK_HUMAN
72 HHSearch 54.8041%-103 - C1 -1U59 5.8
66 HHSearch 54.3936%-104 - C1 -3POZ 10.6