@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00641_MDM4_H: (2014-09-13 )
MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTLALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQDETSRLDLGFEEWDVAGLPWWFLGNLRSNYTPRSNGSTDLQTNQDVGTAIVSDTTDDLWFLNESVSEQLGVGIKVEAADTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTSEDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVPDCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VZV_A_3(3VZV)
MDM2_HUMAN
[Raw transfer]




LTZ_A_3(3W69)
MDM2_HUMAN
[Raw transfer]




K23_A_2(3LBK)
MDM2_HUMAN
[Raw transfer]




I18_A_2(4J74)
MDM2_XENLA
[Raw transfer]




WW8_E_2(3LBJ)
MDM4_HUMAN
[Raw transfer]




IMZ_A_4(1RV1)
MDM2_HUMAN
[Raw transfer]




CHAIN_B_2(3DAB)
MDM4_HUMAN
[Raw transfer]

-

MPD_A_4(3FEA)
MDM4_HUMAN
[Raw transfer]




WW8_E_3(3LBJ)
MDM4_HUMAN
[Raw transfer]




CHAIN_B_2(2AXI)
MDM2_HUMAN
[Raw transfer]

-

CHAIN_Q_4(3JZQ)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_C_3(3EQY)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_P_2(3JZP)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_B_2(1YCR)
MDM2_HUMAN
[Raw transfer]

-

CHAIN_P_2(3JZO)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_C_3(3EQY)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_P_2(3JZQ)
MDM4_HUMAN
[Raw transfer]

-

I18_A_3(4J74)
MDM2_XENLA
[Raw transfer]




CHAIN_B_2(3FDO)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_F_6(3DAB)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_B_3(1YCQ)
MDM2_XENLA
[Raw transfer]

-

CHAIN_D_4(3DAB)
MDM4_HUMAN
[Raw transfer]

-

CHAIN_B_2(4N5T)
MDM4_DANRE
[Raw transfer]

-

VZV_B_4(3VZV)
MDM2_HUMAN
[Raw transfer]




CHAIN_P_2(2Z5S)
MDM4_DANRE
[Raw transfer]

-

CHAIN_P_2(2Z5T)
MDM4_DANRE
[Raw transfer]

-

8 PsiBlast_PDB 93.49100%-132 - C2 -3JZQ 8.2 MDM4_HUMAN
26 PsiBlast_CBE 93.29100%-134 - C2 -3JZQ 7.7 MDM4_HUMAN
27 PsiBlast_CBE 93.13100%-136 - C2 -3DAB - MDM4_HUMAN
29 PsiBlast_CBE 92.16100%-138 - C2 -3DAB 6.5 MDM4_HUMAN
28 PsiBlast_CBE 91.71100%-135 - C2 -3DAB 7.3 MDM4_HUMAN
9 PsiBlast_PDB 91.68100%-134 - C2 -3DAB 7.6 MDM4_HUMAN
10 PsiBlast_PDB 91.49100%-131 - C2 -3FDO 8.0 MDM4_HUMAN
6 PsiBlast_PDB 91.20100%-135 - C2 -3JZO 7.1 MDM4_HUMAN
3 PsiBlast_PDB 90.6398%-138 - C2 -3FEA 2.9 MDM4_HUMAN
7 PsiBlast_PDB 90.57100%-133 - C2 -3JZP 7.4 MDM4_HUMAN
5 PsiBlast_PDB 88.75100%-132 - C2 -3LBJ 8.1 MDM4_HUMAN
30 PsiBlast_CBE 87.0996%-132 - C2 -3EQY 2.4 MDM4_HUMAN
11 PsiBlast_PDB 85.4796%-129 - C2 -3EQY 8.8 MDM4_HUMAN
46 HHSearch 84.5969%-120 - C2 -4N5T 10.6 MDM4_DANRE
41 HHSearch 82.9657%-121 - C2 -2Z5S 6.6 MDM4_DANRE
13 PsiBlast_PDB 82.2461%-127 - C2 -2Z5T 6.3 MDM4_DANRE
12 PsiBlast_PDB 79.1361%-124 - C2 -3DAC - MDM4_DANRE
18 PsiBlast_PDB 77.2955%-119 - C2 -3VZV 6.9 MDM2_HUMAN
48 HHSearch 77.2349%-114 - C2 -2AXI 10.2 MDM2_HUMAN
20 PsiBlast_PDB 77.0258%-122 - C2 -1RV1 6.9 MDM2_HUMAN
19 PsiBlast_PDB 76.6055%-120 - C2 -3W69 8.2 MDM2_HUMAN
31 Fugue 76.5755%-113 - C2 -1YCR 6.6 MDM2_HUMAN
17 PsiBlast_PDB 76.2056%-121 - C2 -3LBK 6.1 MDM2_HUMAN
47 HHSearch 76.0851%-110 * C2 *1YCQ 7.0 MDM2_XENLA
49 HHSearch 74.2654%-107 - C2 -4J74 4.2 MDM2_XENLA