@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00645_PARP1_: (2014-09-13 )
AESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQDGIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEECSGQLVFKSDAYYCTGDVTAWTKCMVKTQTPNRKEWVTPKEFREISYLKKLKVKKQDRIFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSASTKSLQELFLAHILSPWGAEVKAEPVEVVAPRGKSGAALSKKSKGQVKEEGINKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

L3L_A_2(3L3L)

[Raw transfer]



3GN_A_2(3GN7)

[Raw transfer]



A92_A_2(3L3M)

[Raw transfer]



AAI_A_2(2RCW)

[Raw transfer]



78P_A_2(2RD6)

[Raw transfer]



BZC_B_2(1EFY)

[Raw transfer]



BZC_B_2(1EFY)

[Raw transfer]



3MB_B_2(3PAX)

[Raw transfer]



78P_A_3(3KJD)
PARP2_HUMAN
[Raw transfer]



NU1_B_2(4PAX)

[Raw transfer]



FRM_D_4(1UK0)

[Raw transfer]



DHQ_B_2(1PAX)

[Raw transfer]



5ME_A_2(4GV2)
PARP3_HUMAN
[Raw transfer]



1WQ_A_3(4L6S)
PARP1_HUMAN
[Raw transfer]



GJW_A_2(3GJW)

[Raw transfer]



FRM_C_3(1UK0)
PARP1_HUMAN
[Raw transfer]



1WQ_B_4(4L6S)
PARP1_HUMAN
[Raw transfer]



CNA_B_2(1A26)

[Raw transfer]



DMS_A_3(4GV2)
PARP3_HUMAN
[Raw transfer]
34 PsiBlast_CBE 83.6399% -83 - C1 -4L6S 8.2 PARP1_HUMAN
9 PsiBlast_PDB 83.5799% -90 - C1 -2RD6 6.4
12 PsiBlast_PDB 83.2999% -89 - C1 -3L3M 8.0
13 PsiBlast_PDB 83.2899% -87 - C1 -3L3L 5.8
10 PsiBlast_PDB 83.1299% -85 - C1 -3GJW 5.1
7 PsiBlast_PDB 83.04100% -88 - C1 -2RCW 7.0
11 PsiBlast_PDB 82.3099% -91 - C1 -3GN7 6.0
14 PsiBlast_PDB 81.9899% -80 - C1 -4L6S 7.8 PARP1_HUMAN
30 PsiBlast_CBE 81.09100% -83 - C1 -1UK0 8.4
15 PsiBlast_PDB 81.0786% -82 - C1 -1A26 4.7
68 HHSearch 81.0187% -84 - C1 -1EFY 6.7
4 PsiBlast_PDB 80.81100% -82 - C1 -1UK0 7.9 PARP1_HUMAN
19 PsiBlast_PDB 80.5886% -82 - C1 -3PAX 4.5
16 PsiBlast_PDB 80.4586% -81 - C1 -1PAX 5.2
20 PsiBlast_PDB 80.3286% -81 - C1 -4PAX 4.9
69 HHSearch 70.8246% -76 * C1 *3KJD 6.5 PARP2_HUMAN
70 HHSearch 65.0237% -70 - C1 -4GV2 6.6 PARP3_HUMAN