@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01433_AMP1_P: (2014-09-23 )
MKLTKGCAYKYIIFTVLILANILYDNKKRCMIKKNLRISSCGIISRLLKSNSNYNSFNKNYNFTSAISELQFSNFWNLDILQKDIFSNIHNNKNKPQSYIIHKRLMSEKGDNNNNNHQNNNGNDNKKRLGSVVNNEENTCSDKRMKPFEEGHGITQVDKMNNNSDHLQQNGVMNLNSNNVENNNNNNSVVVKKNEPKIHYRKDYKPSGFIINNVTLNINIHDNETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDNEFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPHLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHNYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDNLTDEERILLLKYDSDAFVRYNSCTNIYMKQILMNYNEFLKAKNEKLESFNLTPVNAQFIDAIKYLLEDPHADAGFKSYIVSLPQDRYIINFVSNLDTDVLADTKEYIYKQIGDKLNDVYYKMFKSLEAKADDLTYFNDESHVDFDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKSPYPSNWLTSLSVSAYFDKYFELYDKTYKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNNLKEYLLRLTNKL

Atome Classification :

(19 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BEY_A_3(3EBI)
AMP1_PLAFQ
[Raw transfer]



D66_A_11(3Q43)
AMP1_PLAFQ
[Raw transfer]



1OT_A_7(4K5O)
AMP1_PLAFQ
[Raw transfer]



ARG_A_2(4J3B)
AMP1_PLAFQ
[Raw transfer]



1OS_A_7(4K5P)
AMP1_PLAFQ
[Raw transfer]



BES_A_3(3EBH)
AMP1_PLAFQ
[Raw transfer]



1OU_A_7(4K5N)
AMP1_PLAFQ
[Raw transfer]



D50_A_3(3Q44)
AMP1_PLAFQ
[Raw transfer]



1OV_A_7(4K5M)
AMP1_PLAFQ
[Raw transfer]



BTJ_A_6(3T8V)
AMP1_PLAFQ
[Raw transfer]



19N_A_3(4K5L)
AMP1_PLAFQ
[Raw transfer]



BES_A_3(2HPT)
AMPN_ECOLI
[Raw transfer]



TRP_A_5(3B3B)
AMPN_ECOLI
[Raw transfer]



PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]



TYR_A_5(3B37)
AMPN_ECOLI
[Raw transfer]



LYS_A_5(3B2X)
AMPN_ECOLI
[Raw transfer]



ARG_A_5(3B2P)
AMPN_ECOLI
[Raw transfer]



GOL_A_2(4K5O)
AMP1_PLAFQ
[Raw transfer]



GOL_A_5(4K5N)
AMP1_PLAFQ
[Raw transfer]



DAB_A_3(3KED)
AMPN_ECOLI
[Raw transfer]



GOL_A_10(3B34)
AMPN_ECOLI
[Raw transfer]



GOL_A_8(3EBG)
AMP1_PLAFQ
[Raw transfer]



GOL_A_10(3B34)
AMPN_ECOLI
[Raw transfer]



PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]
2 PsiBlast_PDB 99.7799% -87 - C3 -4K5L Error AMP1_PLAFQ
7 PsiBlast_PDB 99.6099% -86 - C3 -4K5N Error AMP1_PLAFQ
9 PsiBlast_PDB 99.5099% -86 - C3 -4K5P Error AMP1_PLAFQ
10 PsiBlast_PDB 99.4899% -86 - C3 -3EBG Error AMP1_PLAFQ
11 PsiBlast_PDB 99.4699% -87 - C3 -3EBH Error AMP1_PLAFQ
4 PsiBlast_PDB 99.3899% -87 - C3 -3Q43 Error AMP1_PLAFQ
3 PsiBlast_PDB 99.3199% -87 - C3 -4K5M Error AMP1_PLAFQ
6 PsiBlast_PDB 99.1399% -85 - C3 -3EBI Error AMP1_PLAFQ
12 PsiBlast_PDB 99.0799% -87 - C3 -3T8V Error AMP1_PLAFQ
8 PsiBlast_PDB 99.0799% -87 - C3 -4K5O Error AMP1_PLAFQ
5 PsiBlast_PDB 99.0799% -88 - C3 -3Q44 Error AMP1_PLAFQ
1 PsiBlast_PDB 98.9399% -85 - C3 -4J3B Error AMP1_PLAFQ
31 HHSearch 77.7635% -67 - C3 -3B34 Error AMPN_ECOLI
19 PsiBlast_PDB 77.3834% -65 - C3 -3B37 4.0 AMPN_ECOLI
16 PsiBlast_PDB 77.2334% -65 - C3 -3B2P 3.0 AMPN_ECOLI
15 PsiBlast_PDB 77.0834% -65 - C3 -3KED 4.3 AMPN_ECOLI
17 PsiBlast_PDB 77.0134% -65 - C3 -3B2X 2.7 AMPN_ECOLI
20 PsiBlast_PDB 76.9634% -65 - C3 -3B3B 4.0 AMPN_ECOLI
14 PsiBlast_PDB 76.6334% -65 - C3 -2HPT 5.0 AMPN_ECOLI