@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP16_: (2014-09-24 )
MILLTFSTGRRLDFVHHSGVFFLQTLLWILCATVCGTEQYFNVEVWLQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQTRGSSKFHIRRKRYALTGQKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYGPPDKIPPPTRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGCDGPTDRVKEGHSPPDDVDIVIKLDNTASTVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPRHILYCKRSMQEWV

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



576_A_10(2WOA)
MMP12_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



077_A_8(2WO8)
MMP12_HUMAN
[Raw transfer]



068_A_8(2WO9)
MMP12_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



GOL_A_9(4IN9)
?
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



CPS_A_25(1HV5)
MMP11_MOUSE
[Raw transfer]



PGO_A_18(4FVL)
?
[Raw transfer]



CHAIN_B_2(4IN9)
?
[Raw transfer]
-
0XX_B_15(4H1Q)
MMP9_HUMAN
[Raw transfer]



CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
33 HHSearch 72.2041%-100 - C1 -4FVL 10.7 ?
10 PsiBlast_PDB 67.1738% -84 - C1 -4G0D 7.9 MMP13_HUMAN
34 HHSearch 64.6441% -90 - C1 -3BA0 2.4 MMP12_HUMAN
11 PsiBlast_PDB 63.2538% -84 - C1 -1FBL 6.4 MMP1_PIG
46 HHSearch 48.98100% -88 - C1 -1RM8 7.1 MMP16_HUMAN
18 PsiBlast_PDB 37.1851% -78 - C1 -2WO8 7.0 MMP12_HUMAN
19 PsiBlast_PDB 36.6751% -75 - C1 -2WO9 7.9 MMP12_HUMAN
20 PsiBlast_PDB 36.5751% -74 - C1 -2WOA 6.7 MMP12_HUMAN
56 HHSearch 35.2752% -73 - C1 -3AYU 9.5 MMP2_HUMAN
54 HHSearch 34.9049% -81 - C1 -1I76 7.5 MMP8_HUMAN
57 HHSearch 33.8751% -68 * C1 *4H1Q 9.0 MMP9_HUMAN
53 HHSearch 33.0646% -72 - C1 -1HV5 4.1 MMP11_MOUSE
50 HHSearch 32.8143% -72 - C1 -4IN9 7.4 ?