@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP24_: (2014-09-24 )
MPRSRGGRAAPGPPPPPPPPGQAPRWSRWRVPGRLLLLLLPALCCLPGAARAAAAAAGAGNRAAVAVAVARADEAEAPFAGQNWLKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRCGVPDHPHLSRRRRNKRYALTGQKWRQKHITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSSDPSAIMAPFYQYMETHNFKLPQDDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGTKPNICDGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEVERRKERRLPQDDVDIMVTINDVPGSVNAVAVVIPCILSLCILVLVYTIFQFKNKTGPQPVTYYKRPVQEWV

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



576_A_10(2WOA)
MMP12_HUMAN
[Raw transfer]



077_A_8(2WO8)
MMP12_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



068_A_8(2WO9)
MMP12_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



GOL_A_9(4IN9)
?
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



CPS_A_25(1HV5)
MMP11_MOUSE
[Raw transfer]



PGO_A_18(4FVL)
?
[Raw transfer]



CHAIN_B_2(4IN9)
?
[Raw transfer]
-
0XX_B_15(4H1Q)
MMP9_HUMAN
[Raw transfer]



CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
34 HHSearch 72.5541% -97 - C1 -4FVL 11.0 ?
33 HHSearch 67.6645% -93 - C1 -3BA0 2.4 MMP12_HUMAN
13 PsiBlast_PDB 66.0739% -84 - C1 -4G0D 7.5 MMP13_HUMAN
10 PsiBlast_PDB 65.0540% -81 - C1 -1FBL 6.4 MMP1_PIG
46 HHSearch 47.6185% -90 - C1 -1RM8 7.1 MMP16_HUMAN
19 PsiBlast_PDB 39.1552% -75 - C1 -2WO9 7.9 MMP12_HUMAN
18 PsiBlast_PDB 39.1152% -76 - C1 -2WO8 7.0 MMP12_HUMAN
55 HHSearch 38.6754% -73 - C1 -3AYU 9.5 MMP2_HUMAN
20 PsiBlast_PDB 38.6752% -73 - C1 -2WOA 6.7 MMP12_HUMAN
54 HHSearch 38.1152% -80 - C1 -1I76 7.5 MMP8_HUMAN
57 HHSearch 36.5350% -70 * C1 *4H1Q 8.9 MMP9_HUMAN
50 HHSearch 34.8642% -76 - C1 -4IN9 7.4 ?
53 HHSearch 34.6447% -74 - C1 -1HV5 4.1 MMP11_MOUSE