@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF03331_LPXC_PSEA8: (2014-10-06 )
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFCRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMRPAAAV

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

L59_A_6(4FW6)
LPXC_PSEAE
[Raw transfer]




L59_B_15(4FW6)
LPXC_PSEAE
[Raw transfer]




L59_C_24(4FW6)
LPXC_PSEAE
[Raw transfer]




L63_C_25(4FW7)
LPXC_PSEAE
[Raw transfer]




L52_C_11(4FW3)
LPXC_PSEAE
[Raw transfer]




1JS_A_5(4J3D)
LPXC_PSEAE
[Raw transfer]




L52_A_6(4FW3)
LPXC_PSEAE
[Raw transfer]




1WM_A_4(4LCG)
LPXC_PSEAE
[Raw transfer]




L63_B_15(4FW7)
LPXC_PSEAE
[Raw transfer]




L52_D_13(4FW3)
LPXC_PSEAE
[Raw transfer]




1JS_B_8(4J3D)
LPXC_PSEAE
[Raw transfer]




L58_B_10(4FW5)
LPXC_PSEAE
[Raw transfer]




3P3_B_8(4FW4)
LPXC_PSEAE
[Raw transfer]




L58_C_16(4FW5)
LPXC_PSEAE
[Raw transfer]




3P3_D_15(4FW4)
LPXC_PSEAE
[Raw transfer]




1WN_A_5(4LCH)
LPXC_PSEAE
[Raw transfer]




3P3_C_11(4FW4)
LPXC_PSEAE
[Raw transfer]




L52_B_9(4FW3)
LPXC_PSEAE
[Raw transfer]




L63_A_6(4FW7)
LPXC_PSEAE
[Raw transfer]




L58_A_6(4FW5)
LPXC_PSEAE
[Raw transfer]




3P3_A_6(4FW4)
LPXC_PSEAE
[Raw transfer]




L58_D_20(4FW5)
LPXC_PSEAE
[Raw transfer]




24G_A_6(4MDT)
?
[Raw transfer]




1WL_A_4(4LCF)
LPXC_PSEAE
[Raw transfer]




03I_A_4(3U1Y)
LPXC_PSEAE
[Raw transfer]




GVR_C_12(2VES)
LPXC_PSEAE
[Raw transfer]




2CW_A_3(4MQY)
?
[Raw transfer]




RFN_A_3(3UHM)
LPXC_PSEAE
[Raw transfer]




03I_B_6(3U1Y)
LPXC_PSEAE
[Raw transfer]




GVR_A_3(4ISA)
?
[Raw transfer]




GVR_B_8(2VES)
LPXC_PSEAE
[Raw transfer]




GVR_A_5(2VES)
LPXC_PSEAE
[Raw transfer]




LTF_A_5(4IS9)
?
[Raw transfer]




FMT_A_10(4ISA)
?
[Raw transfer]




EDO_A_5(3UHM)
LPXC_PSEAE
[Raw transfer]




UKW_A_10(4MQY)
?
[Raw transfer]




DMS_A_4(4MQY)
?
[Raw transfer]




GAI_A_4(3UHM)
LPXC_PSEAE
[Raw transfer]




PEG_A_12(4FW6)
LPXC_PSEAE
[Raw transfer]




25 PsiBlast_CBE 94.2299%-108 - C1 -4FW5 7.2 LPXC_PSEAE
3 PsiBlast_PDB 89.3299%-109 - C1 -4FW5 7.3 LPXC_PSEAE
30 PsiBlast_CBE 88.5699%-106 - C1 -4FW3 6.6 LPXC_PSEAE
2 PsiBlast_PDB 86.9899%-105 - C1 -4FW4 7.9 LPXC_PSEAE
18 PsiBlast_CBE 85.7799%-105 - C1 -4FW7 6.7 LPXC_PSEAE
28 PsiBlast_CBE 85.7599%-107 - C1 -4FW4 7.5 LPXC_PSEAE
33 PsiBlast_CBE 85.3999%-103 - C1 -2VES 6.0 LPXC_PSEAE
29 PsiBlast_CBE 84.4599%-106 * C1 *4FW3 7.1 LPXC_PSEAE
9 PsiBlast_PDB 84.2699%-105 - C1 -4LCF 7.4 LPXC_PSEAE
26 PsiBlast_CBE 82.4099%-103 - C1 -4FW4 8.0 LPXC_PSEAE
27 PsiBlast_CBE 82.2599%-102 - C1 -4FW4 8.0 LPXC_PSEAE
4 PsiBlast_PDB 82.1499%-106 - C1 -4FW6 6.9 LPXC_PSEAE
31 PsiBlast_CBE 81.8999%-107 - C1 -4FW3 7.2 LPXC_PSEAE
5 PsiBlast_PDB 81.8399%-105 - C1 -4FW7 6.8 LPXC_PSEAE
22 PsiBlast_CBE 80.9899%-106 - C1 -4FW6 6.8 LPXC_PSEAE
7 PsiBlast_PDB 80.9799%-105 - C1 -3U1Y 8.5 LPXC_PSEAE
19 PsiBlast_CBE 80.7999%-103 - C1 -4FW7 6.5 LPXC_PSEAE
11 PsiBlast_PDB 78.7399%-104 - C1 -4LCH 6.9 LPXC_PSEAE
1 PsiBlast_PDB 78.3099%-104 - C1 -4FW3 6.6 LPXC_PSEAE
21 PsiBlast_CBE 78.0999%-102 - C1 -4FW6 7.0 LPXC_PSEAE
32 PsiBlast_CBE 78.0099%-102 - C1 -3U1Y 8.5 LPXC_PSEAE
8 PsiBlast_PDB 77.6399%-103 - C1 -3UHM 6.5 LPXC_PSEAE
24 PsiBlast_CBE 77.4899%-102 - C1 -4FW5 7.6 LPXC_PSEAE
10 PsiBlast_PDB 75.3399%-105 - C1 -4LCG 7.5 LPXC_PSEAE
23 PsiBlast_CBE 74.4199%-101 - C1 -4FW5 7.7 LPXC_PSEAE
12 PsiBlast_PDB 64.25100%-105 - C1 -4J3D 6.8 LPXC_PSEAE
6 PsiBlast_PDB 62.8099% -99 - C1 -2VES 5.6 LPXC_PSEAE
34 PsiBlast_CBE 59.6499%-101 - C1 -2VES 6.1 LPXC_PSEAE
35 PsiBlast_CBE 45.27100% -98 - C1 -4J3D 7.4 LPXC_PSEAE
16 PsiBlast_PDB 35.4658% -96 - C1 -4ISA 5.9 ?
13 PsiBlast_PDB 28.1957% -96 - C1 -4MQY 6.1 ?
14 PsiBlast_PDB 22.8057% -92 - C1 -4MDT 7.3 ?
15 PsiBlast_PDB 18.5258% -93 - C1 -4IS9 5.1 ?