@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF03414_GGTA1_MOUSE: (2014-10-07 )
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNRIPEVGENRWQKDWWFPSWFKNGTHSYQEDNVEGRREKGRNGDRIEEPQLWDWFNPKNRPDVLTVTPWKAPIVWEGTYDTALLEKYYATQKLTVGLTVFAVGKYIEHYLEDFLESADMYFMVGHRVIFYVMIDDTSRMPVVHLNPLHSLQVFEIRSEKRWQDISMMRMKTIGEHILAHIQHEVDFLFCMDVDQVFQDNFGVETLGQLVAQLQAWWYKASPEKFTYERRELSAAYIPFGEGDFYYHAAIFGGTPTHILNLTRECFKGILQDKKHDIEAQWHDESHLNKYFLFNKPTKILSPEYCWDYQIGLPSDIKSVKVAWQTKEYNLVRNNV

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDU_A_5(2VS5)
GGTA1_BOVIN
[Raw transfer]




UPF_B_5(2VFZ)
GGTA1_BOVIN
[Raw transfer]




UPF_A_3(2VFZ)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(1GWV)
GGTA1_BOVIN
[Raw transfer]




UPG_A_5(1G93)
GGTA1_BOVIN
[Raw transfer]




LAT_B_8(1GWV)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1VZX)
GGTA1_BOVIN
[Raw transfer]




UDP_B_9(1GX4)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GX4)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(1GX0)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GWW)
GGTA1_BOVIN
[Raw transfer]




UDP_B_8(1O7O)
GGTA1_BOVIN
[Raw transfer]




UDP_B_12(1O7Q)
GGTA1_BOVIN
[Raw transfer]




UDP_B_9(1VZX)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1O7O)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(2VS3)
GGTA1_BOVIN
[Raw transfer]




UDP_A_4(1VZT)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(2VS3)
GGTA1_BOVIN
[Raw transfer]




UDP_B_9(1VZU)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GX0)
GGTA1_BOVIN
[Raw transfer]




UDP_B_5(1GWW)
GGTA1_BOVIN
[Raw transfer]




UDP_B_7(1VZT)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GWV)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1K4V)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(1K4V)
GGTA1_BOVIN
[Raw transfer]




LAT_A_5(1GWV)
GGTA1_BOVIN
[Raw transfer]




NLC_A_4(2VS3)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1VZU)
GGTA1_BOVIN
[Raw transfer]




NLC_B_7(2VS3)
GGTA1_BOVIN
[Raw transfer]




LAT_B_8(1VZU)
GGTA1_BOVIN
[Raw transfer]




GAL_B_8(1GX0)
GGTA1_BOVIN
[Raw transfer]




UDP_A_4(2VS4)
GGTA1_BOVIN
[Raw transfer]




LAT_B_7(1O7O)
GGTA1_BOVIN
[Raw transfer]




SUGAR_A_5(1GX4)
GGTA1_BOVIN
[Raw transfer]

-

NLC_A_5(2VS4)
GGTA1_BOVIN
[Raw transfer]




LAT_A_4(1O7O)
GGTA1_BOVIN
[Raw transfer]




U5P_A_3(1G8O)
GGTA1_BOVIN
[Raw transfer]




SUGAR_B_11(1GX4)
GGTA1_BOVIN
[Raw transfer]

-

SUGAR_B_11(1O7Q)
GGTA1_BOVIN
[Raw transfer]

-

GLC_B_7(1GWW)
GGTA1_BOVIN
[Raw transfer]




SUGAR_B_7(1VZX)
GGTA1_BOVIN
[Raw transfer]

-

UDP_A_2(2JCK)
GGTA1_BOVIN
[Raw transfer]




SUGAR_A_3(1VZX)
GGTA1_BOVIN
[Raw transfer]

-

UDP_A_2(2JCJ)
GGTA1_BOVIN
[Raw transfer]




LAT_A_4(1VZU)
GGTA1_BOVIN
[Raw transfer]




TRS_A_5(1VZT)
GGTA1_BOVIN
[Raw transfer]




GOL_B_15(1O7Q)
GGTA1_BOVIN
[Raw transfer]




TRS_B_8(1VZT)
GGTA1_BOVIN
[Raw transfer]




TRS_A_5(2JCJ)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(2VXL)
GGTA1_BOVIN
[Raw transfer]




GAL_A_2(1G93)
GGTA1_BOVIN
[Raw transfer]




26 PsiBlast_CBE 90.1979%-112 - C1 -1GWV 6.8 GGTA1_BOVIN
22 PsiBlast_CBE 90.1379%-113 - C1 -1K4V 6.8 GGTA1_BOVIN
23 PsiBlast_CBE 89.3279%-113 - C1 -1GX4 6.8 GGTA1_BOVIN
24 PsiBlast_CBE 88.2379%-111 - C1 -1GX0 6.9 GGTA1_BOVIN
21 PsiBlast_CBE 88.1579%-112 - C1 -1O7Q 7.1 GGTA1_BOVIN
5 PsiBlast_PDB 88.1179%-116 - C1 -1GX4 6.8 GGTA1_BOVIN
1 PsiBlast_PDB 86.6079%-112 - C1 -1K4V 6.5 GGTA1_BOVIN
15 PsiBlast_PDB 85.5379%-113 - C1 -2VS3 7.0 GGTA1_BOVIN
4 PsiBlast_PDB 85.3079%-112 - C1 -1GX0 6.9 GGTA1_BOVIN
3 PsiBlast_PDB 82.2579%-112 - C1 -1GWW 6.9 GGTA1_BOVIN
33 PsiBlast_CBE 81.9979%-111 - C1 -1VZU 6.5 GGTA1_BOVIN
2 PsiBlast_PDB 81.7879%-114 - C1 -1GWV 6.7 GGTA1_BOVIN
10 PsiBlast_PDB 80.8179%-113 - C1 -1O7O 7.0 GGTA1_BOVIN
18 PsiBlast_PDB 80.6479%-110 * C1 *1VZT 6.6 GGTA1_BOVIN
31 PsiBlast_CBE 80.0179%-115 - C1 -2VS3 6.8 GGTA1_BOVIN
16 PsiBlast_PDB 79.6379%-113 - C1 -1VZU 6.3 GGTA1_BOVIN
11 PsiBlast_PDB 77.9779%-113 - C1 -2VS4 7.1 GGTA1_BOVIN
8 PsiBlast_PDB 76.4679%-114 - C1 -1G8O 4.2 GGTA1_BOVIN
32 PsiBlast_CBE 75.9979%-110 - C1 -1VZX 6.9 GGTA1_BOVIN
20 PsiBlast_PDB 75.8579%-117 - C1 -2VS5 4.9 GGTA1_BOVIN
34 PsiBlast_CBE 73.0179%-111 - C1 -1VZT 7.0 GGTA1_BOVIN
25 PsiBlast_CBE 72.7179%-110 - C1 -1GWW 6.8 GGTA1_BOVIN
17 PsiBlast_PDB 71.7879%-112 - C1 -1VZX 6.7 GGTA1_BOVIN
28 PsiBlast_CBE 69.9179%-110 - C1 -1O7O 6.8 GGTA1_BOVIN
19 PsiBlast_PDB 69.1979%-116 - C1 -2JCJ 5.1 GGTA1_BOVIN
14 PsiBlast_PDB 65.3979%-116 - C1 -2VFZ 7.0 GGTA1_BOVIN
36 PsiBlast_CBE 62.7777%-120 - C1 -2VXL 5.1 GGTA1_BOVIN
9 PsiBlast_PDB 62.6079%-120 - C1 -1G93 6.4 GGTA1_BOVIN
12 PsiBlast_PDB 61.0779%-120 - C1 -2JCK 6.0 GGTA1_BOVIN
29 PsiBlast_CBE 58.7979%-117 - C1 -2VFZ 7.6 GGTA1_BOVIN