@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF05649_NEP_HUMAN: (2014-10-10 )
MGKSESQMDITDINTPKPKKKQRWTPLEISLSVLVLLLTIIAVTMIALYATYDDGICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW

Atome Classification :

(8 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

I20_A_6(2QPJ)
NEP_HUMAN
[Raw transfer]



RDF_A_6(1DMT)
NEP_HUMAN
[Raw transfer]



BIR_A_6(1R1H)
NEP_HUMAN
[Raw transfer]



OIR_A_6(1R1J)
NEP_HUMAN
[Raw transfer]



TI1_A_6(1R1I)
NEP_HUMAN
[Raw transfer]



RDF_A_4(3DWB)
ECE1_HUMAN
[Raw transfer]



HA0_A_3(2YB9)
NEP_HUMAN
[Raw transfer]



GOL_A_7(1DMT)
NEP_HUMAN
[Raw transfer]



STS_A_7(1Y8J)
NEP_HUMAN
[Raw transfer]



CIT_A_3(4IUW)
?
[Raw transfer]
1 PsiBlast_PDB 99.92100% -82 - C2 -1DMT 6.6 NEP_HUMAN
2 PsiBlast_PDB 99.59100% -82 - C2 -1R1H 7.3 NEP_HUMAN
4 PsiBlast_PDB 99.41100% -82 - C2 -1R1J 5.7 NEP_HUMAN
6 PsiBlast_PDB 99.15100% -82 - C2 -2QPJ 7.0 NEP_HUMAN
3 PsiBlast_PDB 98.87100% -81 - C2 -1R1I 4.0 NEP_HUMAN
7 PsiBlast_PDB 98.78100% -85 - C2 -2YB9 8.1 NEP_HUMAN
5 PsiBlast_PDB 98.56100% -83 - C2 -1Y8J 5.1 NEP_HUMAN
8 PsiBlast_PDB 79.1139% -70 * C2 *3DWB 5.5 ECE1_HUMAN