@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07647_EPHA7_HUMAN: (2014-10-11 )
MVFQTRYPSWIILCYIWLLRFAHTGEAQAAKEVLLLDSKAQQTELEWISSPPNGWEEISGLDENYTPIRTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYYETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGACIALVSVKVYYKKCWSIIENLAIFPDTVTGSEFSSLVEVRGTCVSSAEEEAENAPRMHCSAEGEWLVPIGKCICKAGYQQKGDTCEPCGRGFYKSSSQDLQCSRCPTHSFSDKEGSSRCECEDGYYRAPSDPPYVACTRPPSAPQNLIFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGSNIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSGVMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTVKTKSTSASINNLKPGTVYVFQIRAFTAAGYGNYSPRLDVATLEEATGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGFIIGRRHCGYSKADQEGDEELYFHFKFPGTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPNSLKTPLGTCSRPISPLLDQNTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQK

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

7X6_A_2(2VWZ)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




C07_A_2(4G2F)

[Raw transfer]




GOL_A_6(2XYU)

[Raw transfer]




ANP_D_4(1MQB)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




IFC_A_2(3DZQ)

[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




CHAIN_B_2(3FXX)

[Raw transfer]

-

CHAIN_B_2(3FY2)

[Raw transfer]

-

24 PsiBlast_CBE 64.1782%-119 - C2 -1JPA 3.9
10 PsiBlast_PDB 64.0272%-121 - C2 -3FY2 6.2
25 PsiBlast_CBE 63.8682%-117 - C2 -1JPA 4.0 EPHB2_MOUSE
9 PsiBlast_PDB 63.4772%-118 - C2 -3FXX 7.5
28 PsiBlast_CBE 63.2385%-124 - C2 -2XYU 5.7
18 PsiBlast_PDB 62.8874%-121 - C2 -3DZQ 7.9
26 PsiBlast_CBE 62.4984%-124 - C2 -2Y6O 4.5
19 PsiBlast_PDB 62.3874%-120 - C2 -4G2F 5.2
27 PsiBlast_CBE 62.2584%-121 - C2 -2Y6M -
40 PsiBlast_CBE 61.5276%-117 * C2 *2VX1 5.9
17 PsiBlast_PDB 61.3574%-116 - C2 -2QOC 4.1
37 PsiBlast_CBE 61.2676%-121 - C2 -4BB4 5.2
44 PsiBlast_CBE 61.1976%-116 - C2 -2VWX 5.1
12 PsiBlast_PDB 60.8372%-117 - C2 -2QO9 3.7
41 PsiBlast_CBE 60.8076%-115 - C2 -2VX0 6.1
39 PsiBlast_CBE 60.6376%-116 - C2 -2X9F 5.4
43 PsiBlast_CBE 60.5476%-114 - C2 -2VWY 5.6
42 PsiBlast_CBE 60.3576%-112 - C2 -2VWZ 6.5
35 PsiBlast_CBE 60.1677%-124 - C2 -2YN8 7.6
33 PsiBlast_CBE 59.6082%-117 - C2 -2HEN 5.3 EPHB2_MOUSE
45 PsiBlast_CBE 59.2577%-119 - C2 -4AW5 6.2
34 PsiBlast_CBE 59.2382%-117 - C2 -2HEN 4.8 EPHB2_MOUSE
31 PsiBlast_CBE 59.2382%-116 - C2 -2HEN 5.6
32 PsiBlast_CBE 59.2282%-115 - C2 -2HEN 4.8 EPHB2_MOUSE
38 PsiBlast_CBE 58.7476%-114 - C2 -2XVD 5.5
36 PsiBlast_CBE 58.4677%-124 - C2 -2YN8 7.3 EPHB4_HUMAN
46 PsiBlast_CBE 56.2972%-118 - C2 -1MQB 5.2
29 PsiBlast_CBE 54.6071%-117 - C2 -3KUL 3.0 EPHA8_HUMAN
47 PsiBlast_CBE 54.2772%-117 - C2 -1MQB 4.9 EPHA2_HUMAN