@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07714_KIT_HUMAN: (2014-10-13 )
MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHTLFTPLLIGFVIVAGMMCIIVMILTYKYLQKPMYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSVRIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPNRQKPVVDHSVRINSVGSTASSSQPLLVHDDV

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

647_A_2(4HVS)

[Raw transfer]



K11_A_2(3EWH)

[Raw transfer]



42Q_A_2(3VHE)

[Raw transfer]



AAX_B_2(1Y6B)

[Raw transfer]



AXI_A_2(4AGC)

[Raw transfer]



64M_A_2(4HW7)

[Raw transfer]



BAX_A_2(4ASD)

[Raw transfer]



AAZ_A_2(1Y6A)

[Raw transfer]



03X_A_2(3U6J)

[Raw transfer]



5CN_A_2(2I0Y)

[Raw transfer]



6C3_A_3(2I0V)

[Raw transfer]



B49_A_2(4AGD)

[Raw transfer]



BPK_A_2(3VHK)

[Raw transfer]



EDO_A_3(3VHK)

[Raw transfer]



B49_A_2(3G0E)

[Raw transfer]
3 PsiBlast_PDB 66.2578%-109 - C1 -4HVS 10.0
6 PsiBlast_PDB 57.8958%-115 - C1 -2I0Y 7.7
5 PsiBlast_PDB 56.7758%-107 - C1 -2I0V 7.8
4 PsiBlast_PDB 55.9259%-110 - C1 -4HW7 9.4
12 PsiBlast_PDB 55.6847%-105 - C1 -3VHK 6.9
15 PsiBlast_PDB 55.6347%-108 * C1 *3VHE 10.6
14 PsiBlast_PDB 55.5447%-117 - C1 -1Y6B 7.8
18 PsiBlast_PDB 53.5146%-111 - C1 -4AGC 8.9
13 PsiBlast_PDB 53.4547%-119 - C1 -1Y6A 6.2
19 PsiBlast_PDB 52.7646%-111 - C1 -4AGD 7.4
20 PsiBlast_PDB 51.7046%-103 - C1 -4ASD 9.5
17 PsiBlast_PDB 51.1949%-105 - C1 -3U6J 11.5
16 PsiBlast_PDB 50.9549%-109 - C1 -3EWH 11.0
11 PsiBlast_PDB 37.6996% -98 - C1 -3G0E 2.8