@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07714_NTRK2_HUMAN: (2014-10-13 )
MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEPNSVDPENITEIFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHINFTRNKLTSLSRKHFRHLDLSELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNESSKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDPVPNMYWDVGNLVSKHMNETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVNLTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPSTDVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKGPASVISNDDDSASPLHHISNGSNTPSSSEGGPDAVIIGMTKIPVIENPQYFGITNSQLKPDTFVQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASPVYLDILG

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EBI_A_2(3I81)

[Raw transfer]



0F4_A_4(3V5Q)
NTRK3_HUMAN
[Raw transfer]



351_A_3(3ETA)
INSR_HUMAN
[Raw transfer]



LGX_A_2(3NW5)

[Raw transfer]



MUJ_A_2(4AT5)

[Raw transfer]



V4Z_C_10(4AOJ)

[Raw transfer]



0LI_A_3(3ZOS)
DDR1_HUMAN
[Raw transfer]



T6E_A_2(4AT4)

[Raw transfer]



STI_A_3(4BKJ)
DDR1_HUMAN
[Raw transfer]



V4Z_B_7(4AOJ)
NTRK1_HUMAN
[Raw transfer]



IR1_A_3(4IBM)
?
[Raw transfer]



LTI_A_2(4AT3)

[Raw transfer]



V4Z_A_4(4AOJ)
NTRK1_HUMAN
[Raw transfer]



BMI_B_2(2OJ9)

[Raw transfer]



PDR_A_5(3LVP)
IGF1R_HUMAN
[Raw transfer]
2 PsiBlast_PDB 95.10100%-129 - C1 -4AT4 9.6
1 PsiBlast_PDB 94.87100%-126 - C1 -4AT3 6.9
3 PsiBlast_PDB 91.10100%-124 - C1 -4AT5 9.0
5 PsiBlast_PDB 65.8473%-128 - C1 -4AOJ 8.1 NTRK1_HUMAN
4 PsiBlast_PDB 65.5482%-127 - C1 -3V5Q 10.9 NTRK3_HUMAN
21 PsiBlast_CBE 64.8473%-124 - C1 -4AOJ 7.9
22 PsiBlast_CBE 62.1573%-125 - C1 -4AOJ 8.0 NTRK1_HUMAN
15 PsiBlast_PDB 39.2544%-111 - C1 -3ETA 11.9 INSR_HUMAN
16 PsiBlast_PDB 36.6244%-109 - C1 -4IBM 7.1 ?
10 PsiBlast_PDB 33.9647%-117 - C1 -4BKJ 8.4 DDR1_HUMAN
9 PsiBlast_PDB 32.3147%-111 - C1 -3ZOS 10.4 DDR1_HUMAN
20 PsiBlast_PDB 29.9844%-115 - C1 -3NW5 7.3
17 PsiBlast_PDB 26.0744%-114 - C1 -3I81 8.7
19 PsiBlast_PDB 24.8844%-113 - C1 -2OJ9 7.9
12 PsiBlast_PDB 11.1643%-116 - C1 -3LVP 3.8 IGF1R_HUMAN