@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF10613_GRIA4_HUMAN: (2014-10-17 )
MRIISRQIVLLFSGFWGLAMGAFPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVIKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDVPTLGNDTAAIENRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKLTFSEAIRNKARLSITGSVGENGRVLTPDCPKAVHTGTAIRQSSGLAVIASDLP

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_10(4FAT)

[Raw transfer]




DMS_A_7(3O6H)

[Raw transfer]




GOL_A_14(3FAS)

[Raw transfer]




GOL_B_15(3FAS)
GRIA4_RAT
[Raw transfer]




ACY_A_10(3FAT)
GRIA4_RAT
[Raw transfer]




GOL_A_10(3PMW)

[Raw transfer]




GOL_B_13(3FAT)
GRIA4_RAT
[Raw transfer]




GOL_A_10(3O28)

[Raw transfer]




GOL_B_15(3FAT)
GRIA4_RAT
[Raw transfer]




O29_A_9(3O29)

[Raw transfer]




O27_A_6(3O6G)

[Raw transfer]




O26_A_3(3O6I)

[Raw transfer]




496_A_3(4FAT)

[Raw transfer]




RN8_A_5(3RN8)
GRIA2_HUMAN
[Raw transfer]




O25_A_6(3O6H)

[Raw transfer]




G69_A_13(3PMW)

[Raw transfer]




LY7_A_7(3KGC)

[Raw transfer]




O30_A_2(3O2A)

[Raw transfer]




RN8_A_5(3RN8)

[Raw transfer]




RN8_B_7(3RN8)
GRIA2_HUMAN
[Raw transfer]




RNN_B_7(3RNN)
GRIA2_HUMAN
[Raw transfer]




7T9_B_5(2XHD)
GRIA2_HUMAN
[Raw transfer]




RNN_A_4(3RNN)

[Raw transfer]




RNN_A_4(3RNN)
GRIA2_HUMAN
[Raw transfer]




O28_A_2(3O28)

[Raw transfer]




1ND_A_5(2XX7)

[Raw transfer]




1ND_A_5(2XX7)
GRIA2_RAT
[Raw transfer]




4MP_A_3(3LSW)

[Raw transfer]




LY7_A_7(3KGC)
GRIA2_RAT
[Raw transfer]




557_A_8(3PMV)

[Raw transfer]




EDO_A_8(3O6H)

[Raw transfer]




1ND_B_7(2XX7)
GRIA2_RAT
[Raw transfer]




PZI_A_3(3LSX)

[Raw transfer]




ACY_C_(3FAT)

[Raw transfer]




12 PsiBlast_PDB 21.2999% -39 - C1 -3FAS Error GRIA4_RAT
11 PsiBlast_PDB 21.2299% -41 - C1 -3FAT 2.7 GRIA4_RAT
47 PsiBlast_CBE 21.1293% -39 - C1 -3O29 2.8
26 PsiBlast_CBE 20.8499% -41 - C1 -3FAS Error
24 PsiBlast_CBE 20.8199% -41 - C1 -3FAT 3.5
38 PsiBlast_CBE 20.7793% -37 - C1 -3O28 3.5
43 PsiBlast_CBE 20.7093% -38 - C1 -3O6I 2.8
46 PsiBlast_CBE 20.6493% -35 - C1 -3O2A 3.0
28 PsiBlast_CBE 20.6187% -40 - C1 -3RNN 2.7
42 PsiBlast_CBE 20.6093% -38 - C1 -3PMV 2.7
39 PsiBlast_CBE 20.5993% -35 - C1 -4FAT 3.0
45 PsiBlast_CBE 20.5193% -36 - C1 -3O6G 3.0
62 PsiBlast_CBE 20.4890% -36 - C1 -3KGC 3.6
25 PsiBlast_CBE 20.4599% -41 - C1 -3FAT 3.1 GRIA4_RAT
20 PsiBlast_PDB 20.3693% -35 - C1 -2XHD 2.9 GRIA2_HUMAN
41 PsiBlast_CBE 20.3193% -36 - C1 -3PMW 2.7
16 PsiBlast_PDB 20.2387% -40 - C1 -3RN8 3.2 GRIA2_HUMAN
30 PsiBlast_CBE 20.1687% -39 - C1 -3RN8 3.2
54 PsiBlast_CBE 20.0993% -37 - C1 -3LSW 2.2
53 PsiBlast_CBE 20.0993% -36 - C1 -3LSX 2.8
59 PsiBlast_CBE 20.0890% -35 - C1 -2XX7 3.8
15 PsiBlast_PDB 20.0687% -38 * C1 *3RNN 4.0 GRIA2_HUMAN
44 PsiBlast_CBE 19.8993% -33 - C1 -3O6H 2.9
29 PsiBlast_CBE 19.7887% -36 - C1 -3RNN 2.6 GRIA2_HUMAN
63 PsiBlast_CBE 19.7490% -38 - C1 -3KGC 3.1 GRIA2_RAT
31 PsiBlast_CBE 19.7087% -37 - C1 -3RN8 3.1 GRIA2_HUMAN
61 PsiBlast_CBE 19.6390% -33 - C1 -2XX7 3.5 GRIA2_RAT
60 PsiBlast_CBE 19.6290% -35 - C1 -2XX7 3.2 GRIA2_RAT