@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARA_CANFA: (2016-03-19 )
MVDTESPICPLSPLEADDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFSFTEYQYLGSGPGSDGSVITDTLSPAPSPSSVTHPAAPGGAEEPSSVALNIECRICGDRASGYHYGVHACEGCKGFFRRTIRLKLAYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEQDPEDAETADLKSLAKRIYEAYLKNFNMNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLKLHLQTNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]



IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]



MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]



MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]



Y1N_A_2(4CI4)
PPARA_HUMAN
[Raw transfer]



735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]



RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]



13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]



13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]



ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]



ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]



CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]



WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]



471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]



471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]



GW0_A_2(3TKM)
PPARD_HUMAN
[Raw transfer]



08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]



471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]



Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]



471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]



WY1_B_8(4BCR)
PPARA_HUMAN
[Raw transfer]



WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]



PLB_D_12(3DZU)
PPARG_HUMAN
[Raw transfer]



GW9_D_12(3E00)
PPARG_HUMAN
[Raw transfer]
31 PsiBlast_CBE 91.5497%-147 - C3 -2NPA 9.4 PPARA_HUMAN
27 PsiBlast_CBE 91.2397%-140 - C3 -3ET1 6.1 PPARA_HUMAN
13 PsiBlast_PDB 91.2197%-144 - C3 -2P54 9.4 PPARA_HUMAN
25 PsiBlast_CBE 90.7297%-154 - C- -3KDU - PPARA_HUMAN -
26 PsiBlast_CBE 90.4897%-157 - C- -3KDT - PPARA_HUMAN -
4 PsiBlast_PDB 90.4297%-140 - C3 -3SP6 8.0 PPARA_HUMAN
16 PsiBlast_PDB 90.2065%-124 - C3 -3E00 4.2 PPARG_HUMAN
1 PsiBlast_PDB 90.1297%-144 - C3 -1K7L - PPARA_HUMAN -
12 PsiBlast_PDB 89.8297%-138 - C3 -2NPA 9.2 PPARA_HUMAN
8 PsiBlast_PDB 89.3597%-142 - C3 -3ET1 7.0 PPARA_HUMAN
6 PsiBlast_PDB 89.3497%-157 - C- -3KDU - PPARA_HUMAN -
3 PsiBlast_PDB 89.1497%-153 - C3 -4CI4 8.5 PPARA_HUMAN
24 PsiBlast_CBE 89.1197%-145 - C3 -4BCR 5.2 PPARA_HUMAN
2 PsiBlast_PDB 88.8097%-143 - C3 -4BCR 5.6 PPARA_HUMAN
5 PsiBlast_PDB 88.2497%-160 - C- -3KDT - PPARA_HUMAN -
9 PsiBlast_PDB 87.8797%-142 - C3 -2ZNN 11.2 PPARA_HUMAN
15 PsiBlast_PDB 87.7265%-130 * C3 *3DZU 5.5 PPARG_HUMAN
34 HHSearch 87.3197%-140 - C3 -3VI8 11.2 PPARA_HUMAN
10 PsiBlast_PDB 87.3197%-140 - C3 -3VI8 11.2 PPARA_HUMAN
7 PsiBlast_PDB 87.2597%-149 - C3 -3G8I 9.5 PPARA_HUMAN
14 PsiBlast_PDB 86.4697%-147 - C3 -3FEI 7.5 PPARA_HUMAN
28 PsiBlast_CBE 86.0597%-135 - C3 -1KKQ 11.3 PPARA_HUMAN
30 PsiBlast_CBE 85.5597%-142 - C3 -1KKQ 10.8 PPARA_HUMAN
29 PsiBlast_CBE 85.4497%-139 - C3 -1KKQ 10.8 PPARA_HUMAN
11 PsiBlast_PDB 84.7197%-137 - C3 -1KKQ 10.7 PPARA_HUMAN
20 PsiBlast_PDB 82.7270%-143 - C3 -3TKM 6.2 PPARD_HUMAN
18 PsiBlast_PDB 81.5669%-144 - C3 -2XYW 9.1 PPARD_HUMAN
19 PsiBlast_PDB 81.1869%-144 - C3 -2XYX 7.3 PPARD_HUMAN
17 PsiBlast_PDB 80.8469%-134 - C3 -2XYJ 5.6 PPARD_HUMAN