@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0261: (2016-03-13 )
MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSALMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGIDGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNHMIIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIB_D_8(4RK0)
?
[Raw transfer]



RIB_B_6(4RK0)
?
[Raw transfer]



RIB_A_5(4RK0)
?
[Raw transfer]



RIB_C_7(4RK0)
?
[Raw transfer]
25 PsiBlast_CBE 86.7231%-111 - C1 -1ZVV - CCPA_BACSU -
26 PsiBlast_CBE 85.2531%-111 - C1 -1ZVV - CCPA_BACSU -
24 PsiBlast_CBE 84.7731%-110 - C1 -1ZVV - CCPA_BACSU -
4 PsiBlast_PDB 84.0331%-116 - C1 -2PUB - PURR_ECOLI -
2 PsiBlast_PDB 83.2241%-117 - C1 -4RK0 4.1 ?
3 PsiBlast_PDB 82.9631%-114 - C1 -2PUA - PURR_ECOLI -
10 PsiBlast_PDB 82.9130%-119 - C1 -2PUG - PURR_ECOLI -
6 PsiBlast_PDB 82.8931%-113 - C1 -2PUD - PURR_ECOLI -
17 PsiBlast_PDB 82.8730%-119 - C1 -1ZAY - PURR_ECOLI -
16 PsiBlast_PDB 82.6830%-118 - C1 -1QPZ - PURR_ECOLI -
19 PsiBlast_PDB 82.6530%-117 - C1 -1VPW - PURR_ECOLI -
8 PsiBlast_PDB 82.4930%-118 - C1 -2PUE - PURR_ECOLI -
18 PsiBlast_PDB 82.4830%-118 - C1 -1JFT - PURR_ECOLI -
5 PsiBlast_PDB 82.3831%-117 - C1 -2PUC - PURR_ECOLI -
23 PsiBlast_CBE 82.2541%-117 - C1 -4RK0 3.9 ?
7 PsiBlast_PDB 82.2330%-119 - C1 -1JH9 - PURR_ECOLI -
49 HHSearch 82.2028%-105 - C1 -1QPZ - PURR_ECOLI -
21 PsiBlast_CBE 82.0641%-117 - C1 -4RK0 4.4 ?
14 PsiBlast_PDB 82.0530%-119 - C1 -1QP0 - PURR_ECOLI -
13 PsiBlast_PDB 81.9430%-116 - C1 -1WET - PURR_ECOLI -
22 PsiBlast_CBE 81.9341%-116 - C1 -4RK0 4.6 ?