@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0545: (2016-03-16 )
MADLLNVLKDKLSGKNVKIVLPEGEDERVLTAATQLQATDYVTPIVLGDETKVQSLAQKLDLDISNIELINPATSELKAELVQSFVERRKGKATEEQAQELLNNVNYFGTMLVYAGKADGLVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKGDEQYIFGDCAINPELDSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAEKKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGYDAVGPVLQGLNSPVNDLSRGCSIEDVYNLSIITAAQALQ

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_C_3(2AF4)
PTAS_METTE
[Raw transfer]



COA_C_3(2AF4)
PTAS_METTE
[Raw transfer]



COA_D_4(2AF3)
PTAS_METTE
[Raw transfer]



GOL_A_3(1VMI)
EUTD_ECOLI
[Raw transfer]



GOL_A_3(1VMI)
EUTD_ECOLI
[Raw transfer]



GOL_A_2(1VMI)
EUTD_ECOLI
[Raw transfer]



TRS_A_2(4E4R)
PTAS_STAAR
[Raw transfer]



COA_F_6(2AF3)
PTAS_METTE
[Raw transfer]
1 PsiBlast_PDB 97.1597% -94 - C2 -4E4R 4.0 PTAS_STAAR
25 PsiBlast_CBE 86.4565% -78 - C2 -1XCO - PTAS_BACSU -
28 PsiBlast_CBE 86.4065% -81 - C2 -1TD9 - PTAS_BACSU -
23 PsiBlast_CBE 86.3865% -79 - C2 -1XCO - PTAS_BACSU -
41 HHSearch 86.3266% -84 - C2 -1TD9 - PTAS_BACSU -
29 PsiBlast_CBE 86.3165% -79 - C2 -1TD9 - PTAS_BACSU -
30 PsiBlast_CBE 86.2765% -82 - C2 -1TD9 - PTAS_BACSU -
3 PsiBlast_PDB 86.1865% -79 - C2 -1XCO - PTAS_BACSU -
26 PsiBlast_CBE 85.9965% -80 - C2 -1TD9 - PTAS_BACSU -
2 PsiBlast_PDB 85.9865% -81 - C2 -1TD9 - PTAS_BACSU -
21 PsiBlast_CBE 85.7865% -78 - C2 -1XCO - PTAS_BACSU -
24 PsiBlast_CBE 85.7065% -78 - C2 -1XCO - PTAS_BACSU -
22 PsiBlast_CBE 85.4865% -80 - C2 -1XCO - PTAS_BACSU -
5 PsiBlast_PDB 78.8144% -72 - C2 -2AF4 6.1 PTAS_METTE
33 PsiBlast_CBE 78.7044% -73 - C2 -1QZT - PTAS_METTE -
6 PsiBlast_PDB 78.3944% -74 - C2 -1QZT - PTAS_METTE -
40 HHSearch 78.3345% -72 - C2 -2AF4 6.1 PTAS_METTE
32 PsiBlast_CBE 78.2344% -72 - C2 -1QZT - PTAS_METTE -
7 PsiBlast_PDB 78.0944% -72 - C2 -2AF3 4.9 PTAS_METTE
34 PsiBlast_CBE 77.8244% -74 - C2 -1QZT - PTAS_METTE -
31 PsiBlast_CBE 77.5744% -73 - C2 -2AF3 4.2 PTAS_METTE
42 HHSearch 76.5240% -71 * C2 *1VMI 2.4 EUTD_ECOLI
8 PsiBlast_PDB 73.0240% -70 - C2 -1VMI 2.7 EUTD_ECOLI