@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1089: (2016-03-22 )
MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGRKTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGIYESLLTVNK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_A_12(2NUA)
SUCD_ECOLI
[Raw transfer]




COA_A_9(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_A_11(2NU8)
SUCD_ECOLI
[Raw transfer]




COA_D_10(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_A_3(4XX0)
?
[Raw transfer]




COA_A_11(2NU7)
SUCD_ECOLI
[Raw transfer]




COA_W_23(1JLL)
SUCD_ECOLI
[Raw transfer]




COA_D_10(1CQI)
SUCD_ECOLI
[Raw transfer]




COA_G_7(2SCU)
SUCD_ECOLI
[Raw transfer]




COA_G_7(2SCU)
SUCD_ECOLI
[Raw transfer]




22 PsiBlast_CBE 95.7665%-100 - C2 -1CQJ 8.1 SUCD_ECOLI
6 PsiBlast_PDB 95.6064% -99 - C2 -2NU8 8.6 SUCD_ECOLI
4 PsiBlast_PDB 95.5665% -99 - C2 -1CQJ 8.3 SUCD_ECOLI
5 PsiBlast_PDB 95.2864% -98 - C2 -2NU7 8.8 SUCD_ECOLI
24 PsiBlast_CBE 95.2264% -98 - C2 -2NU7 - SUCD_ECOLI -
2 PsiBlast_PDB 95.0965% -96 - C2 -1JLL - SUCD_ECOLI -
25 PsiBlast_CBE 95.0464% -98 - C2 -2NU8 - SUCD_ECOLI -
20 PsiBlast_CBE 95.0365% -96 - C2 -1JLL 7.7 SUCD_ECOLI
21 PsiBlast_CBE 95.0265% -96 - C2 -1JKJ - SUCD_ECOLI -
1 PsiBlast_PDB 95.0265% -96 - C2 -1JKJ - SUCD_ECOLI -
7 PsiBlast_PDB 94.9564%-103 - C2 -2NUA 7.9 SUCD_ECOLI
26 PsiBlast_CBE 94.6464%-103 - C2 -2NUA - SUCD_ECOLI -
9 PsiBlast_PDB 94.2261% -97 - C2 -1EUC - SUCA_PIG -
3 PsiBlast_PDB 94.0465%-100 - C2 -1CQI - SUCD_ECOLI -
12 PsiBlast_PDB 94.0160%-105 - C2 -3UFX - SUCD_THETH -
11 PsiBlast_PDB 93.8061% -96 - C2 -4XX0 8.8 ?
19 PsiBlast_CBE 93.4465%-100 - C2 -1SCU - SUCD_ECOLI -
23 PsiBlast_CBE 93.3665%-101 - C2 -1CQI 6.9 SUCD_ECOLI
10 PsiBlast_PDB 93.2261% -94 - C2 -2FPG - SUCA_PIG -
29 HHSearch 92.0158%-107 - C2 -1OI7 - SUCD_THETH -
52 Fugue 60.0660%-112 - C2 -2SCU 7.9 SUCD_ECOLI
50 Fugue 59.7761%-113 * C2 *2SCU 7.9 SUCD_ECOLI