@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1609: (2016-03-27 )
MSVDTYTETTKIDKLLKKPTSHFQLSTTQLYNKILDNNEGVLTELGAVNASTGKYTGRSPKDKFFVSEPSYRDNIDWGEINQPIDEETFLKLYHKVLDYLDKKDELYVFKGYAGSDKDTMLKLTVINELAWHNLFAKNMFIRPESKEEATKIKPNFTIVSAPHFKADPEVDGTKSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPHRKLIGDDEHGWNKNGVFNIEGGCYAKAINLSKEKEPQIFDAIKYGAILENTVVAEDGSVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKLAGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLHDVDVYLVNTGWTGGKYGVGRRISLHYTRQMVNQAISGKLKNAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDKEKYKAQAEDLIQRFEKNFEKFGEKVEHIAEKGSFNK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(1AQ2)
PCKA_ECOLI
[Raw transfer]



ATP_A_6(2OLR)
PCKA_ECOLI
[Raw transfer]



ATP_A_4(2OLQ)
PCKA_ECOLI
[Raw transfer]



ATP_B_8(1YTM)
PCKA_ANASU
[Raw transfer]



ADP_A_3(1K3D)
PCKA_ECOLI
[Raw transfer]



ADP_A_3(1K3C)
PCKA_ECOLI
[Raw transfer]



ATP_A_4(1OS1)
PCKA_ECOLI
[Raw transfer]



ATP_A_7(1YTM)
PCKA_ANASU
[Raw transfer]



ATP_A_6(2OLR)
PCKA_ECOLI
[Raw transfer]



ATP_A_7(1YTM)
PCKA_ANASU
[Raw transfer]



ATP_X_5(2PXZ)
PCKA_ECOLI
[Raw transfer]



ATP_X_5(2PY7)
PCKA_ECOLI
[Raw transfer]



ATP_A_11(1XKV)
PCKA_THET8
[Raw transfer]



PEG_A_6(3VAA)
AROK_BACTN
[Raw transfer]



PYR_A_8(1YLH)
PCKA_ACTSZ
[Raw transfer]
22 PsiBlast_CBE 98.5854% -83 - C3 -2PC9 - PCKA_THET8 -
21 PsiBlast_CBE 98.5554% -87 - C3 -2PC9 - PCKA_THET8 -
2 PsiBlast_PDB 98.1254% -87 - C3 -2PC9 - PCKA_THET8 -
1 PsiBlast_PDB 97.8554% -86 - C3 -1XKV 6.5 PCKA_THET8
27 HHSearch 96.2951% -71 - C3 -2OLR 9.3 PCKA_ECOLI
10 PsiBlast_PDB 95.4852% -81 - C3 -2PY7 9.4 PCKA_ECOLI
4 PsiBlast_PDB 95.4352% -84 - C3 -1K3D 7.7 PCKA_ECOLI
7 PsiBlast_PDB 95.3752% -81 - C3 -2OLR 9.3 PCKA_ECOLI
6 PsiBlast_PDB 95.3152% -81 - C3 -2OLQ 9.7 PCKA_ECOLI
3 PsiBlast_PDB 95.3152% -81 - C3 -1K3C 8.8 PCKA_ECOLI
8 PsiBlast_PDB 95.2852% -83 - C3 -1AQ2 9.0 PCKA_ECOLI
9 PsiBlast_PDB 94.9352% -82 - C3 -2PXZ 9.5 PCKA_ECOLI
5 PsiBlast_PDB 94.8352% -76 - C3 -1OS1 8.4 PCKA_ECOLI
13 PsiBlast_PDB 93.6250% -94 - C3 -1OEN - PCKA_ECOLI -
12 PsiBlast_PDB 93.4051% -88 - C3 -1YLH 2.6 PCKA_ACTSZ
11 PsiBlast_PDB 93.1951% -84 - C3 -1YGG - PCKA_ACTSZ -
28 HHSearch 92.9647% -70 - C3 -1YTM 9.2 PCKA_ANASU
15 PsiBlast_PDB 92.7248% -72 - C3 -1YTM 9.2 PCKA_ANASU
23 PsiBlast_CBE 92.6248% -72 - C3 -1YTM 9.3 PCKA_ANASU
14 PsiBlast_PDB 92.1948% -77 - C3 -1YVY - PCKA_ANASU -
36 HHSearch 10.8932% 319 - C3 -3VAA 2.3 AROK_BACTN