@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1661: (2016-03-27 )
MIIKSLEIYGYGQFVQRKIEFNKNFTEIFGENEAGKSTIQAFIHSILFGFPTKKSKEPRLEPRLGNQYGGKLVLILDDGLEIEVERIKGSAQGDVKVYLPNGAVRDDAWLQKKLNYISKKTYQGIFSFDVLGLQDIHRNLNEKQLQDYLLQAGALGSTEFTSMREVINRKKDELYKKSGKNPIINQQIEQLKQLESQIREEEAKLETYHRLVDDRDKSSRRLENLKHNLNQLSKMHEEKQKEVALHDHSQEWKSLEQQLNIEPITFPEKGVDRYEKARAHKQSLERDIGLRNERLAQLKEEATQLEPVKQSDIDAFISLNQQENEIKNKEFELTAIEKDIANKQRDKDELQANIGWSETHHDVDSSEAMKSYVSEQIKNKQEQAAYIKQLERSLEENKIEDNAVHSELDSVEEKIVPEETFEKKKEYSQQVIELNEKENLYSKLKERFEIEQQEKQKRQKLLRTTFILLTLVGIGLTAFSFISNNMLFGIIFAVLTLVFVIGIIMSKSKEVDYSEAITDEIEEIKAQLAILDENYDLDFDLDEQYRIRDHWQQALKNKDILEEKRQYIEGRLNDAKGRHDELQSTVENVKDELYLSSKISNDLIVDSISTMANIKALDQHISDLNQQRQQLVQELDTFYNHAEAVTKSQFVYFNKLSLFHDVQQWLKSAEDTNEKWRINAENTKLVTNELNHLNAQLEENNKEITALFDFINVGTEEDFYQHHEDYQTYTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQVSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRLPQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISLIKVLRPYYPFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEVITLNKIEEGGKR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_A_3(3EUJ)
MUKB_HAEDU
[Raw transfer]
55 Fugue 77.0914% -5 - C3 -3VKG - ? -
61 Fugue 65.7715% 12 - C1 -4HNY - NAT1_YEAST -
46 HHSearch 59.7820% -63 - C3 -3QF7 - RAD50_THEMA -
34 HHSearch 56.6423% 37 - C2 -3QF7 - RAD50_THEMA -
33 HHSearch 55.8724% 21 - C2 -3AUY - RAD50_METJA -
37 HHSearch 55.3820% -35 - C3 -1F2T - ? -
32 HHSearch 53.9421% 22 - C2 -3KTA - SMC_PYRFU -
39 HHSearch 52.9515% -36 - C3 -3KTA - ? -
17 PsiBlast_PDB 51.8120% 37 - C2 -4UX3 - SMC3_YEAST -
29 HHSearch 51.3613% -11 - C2 -3QKS - RAD50_PYRFU -
42 HHSearch 50.2717% -29 - C3 -3AUY - RAD50_METJA -
31 HHSearch 49.8414% -12 - C2 -1F2T - RAD50_PYRFU -
36 HHSearch 48.5820% 48 - C2 -2O5V - RECF_DEIRA -
13 PsiBlast_PDB 46.1921% 90 - C3 -4MU6 - ? -
40 HHSearch 45.5920% 33 - C2 -3QKT - RAD50_PYRFU -
53 Fugue 45.1111% 7 - C2 -1F2U - ? -
35 HHSearch 44.5820% 35 - C3 -3QKT - -
14 PsiBlast_PDB 43.5821% 99 - C3 -3VKG - ? -
44 HHSearch 40.8913% 9 - C3 -1W1W - SMC1_YEAST -
58 Fugue 40.2912% 54 * C4 *3EUJ - MUKB_HAEDU -
49 HHSearch 32.7631% 146 * C2 *3EUJ 4.4 MUKB_HAEDU