@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0166: (2015-12-13 )
MLQRPKIVAELSANHNQDLNLAKESLHAIKESGADFVKLQTYTPSCMTLDSKEDPFIIQGTLWDKENLYGLYQKASTPLEWHAELFELAKKLDLGIFSSPFSSKALELLESLDCPMYKIASFEIVDLDLIEKAARTQKPIILSSGIATHAELQDAISLCRGVNNFDITLLKCVSAYPSKIEDAHLLSMVKLGETFGVKFGLSDHTIGSLCPILATTLGASMIEKHFILNKSLQTPDSAFSMDFNGFKSMVGAIKQSVLALGEEEPKINPKTLEERRFFARSLFVIKDIQKGEALTSDNIKALRPNLGLHPKFYKEILGQKASKFLKANTPLSADDIERAL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_4(1XUZ)
?
[Raw transfer]




LMR_A_3(4IPJ)
?
[Raw transfer]




LMR_A_3(4IPI)
?
[Raw transfer]




MPD_A_3(2ZDR)
?
[Raw transfer]




2 PsiBlast_PDB 95.4030% -87 - C5 -1XUU - ? -
4 PsiBlast_PDB 94.9530% -87 - C5 -2ZDR 3.0 ?
6 PsiBlast_PDB 94.8629% -87 - C5 -4IPJ 3.1 ?
3 PsiBlast_PDB 94.8530% -85 - C5 -1XUZ 3.9 ?
1 PsiBlast_PDB 94.8231% -84 - C5 -1VLI - SPSE_BACSU -
5 PsiBlast_PDB 94.7930% -89 - C5 -3CM4 - ? -
7 PsiBlast_PDB 94.7029% -88 - C5 -4IPI 4.1 ?
17 HHSearch 94.2432% -76 - C5 -1VLI - SPSE_BACSU -
8 PsiBlast_PDB 93.9129% -84 - C5 -2WQP - ? -
16 HHSearch 93.7730% -79 - C5 -2WQP - ? -
9 PsiBlast_PDB 84.4726% -85 - C5 -3G8R - ? -
15 HHSearch 84.2125% -81 - C5 -3G8R - ? -
21 HHSearch 65.7119% -84 - C5 -1VS1 - ? -
22 HHSearch 65.0920% -77 - C5 -3NVT - ? -
26 HHSearch 64.2920% -72 * C5 *1VR6 - AROF_THEMA -
18 HHSearch 61.1113% -74 - C5 -3SZ8 - ? -
13 PsiBlast_PDB 59.7822% -76 - C5 -1VR6 - AROF_THEMA -
12 PsiBlast_PDB 59.4022% -75 - C5 -3PG9 - AROF_THEMA -
11 PsiBlast_PDB 59.2622% -75 - C5 -1RZM - AROF_THEMA -
24 HHSearch 58.7314% -90 - C5 -3TML - KDSA_BURCJ -