@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0316: (2016-03-14 )
MFDFMTLEKVREKGPLVHNITNIVVANDSANGLLAIGASPIMASAKEEMDELAKMADVLVINIGTLDGELVTAMKIAGRAANVAGTPVVLDPVGVGATSYRRKVVQELLAEIQFAAIRGNAGELAAIAGEAWEAKGVDAGVGSADVLSIAGKVANEWSTVVIISGEVDVISDGTRFAKVANGSALLPRITGSGCLLSAVCGSFIAVQDDAFRASVEACASYAVASEYAEMELERKLPGSFRPLFLDALASWSVEKTRAKAKIQESGEHK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_11(1ESQ)
THIM_BACSU
[Raw transfer]




ATP_C_13(1ESQ)
THIM_BACSU
[Raw transfer]




ATP_B_12(1ESQ)
THIM_BACSU
[Raw transfer]




TZE_A_5(1C3Q)
THIM_BACSU
[Raw transfer]




TZE_A_6(1C3Q)
THIM_BACSU
[Raw transfer]




TZE_A_6(1C3Q)
THIM_BACSU
[Raw transfer]




TZE_B_7(1C3Q)
THIM_BACSU
[Raw transfer]




25 PsiBlast_CBE 97.2847%-103 - C2 -1ESJ - THIM_BACSU -
21 PsiBlast_CBE 97.0547%-106 - C2 -1C3Q 3.1 THIM_BACSU
3 PsiBlast_PDB 96.0347%-101 - C2 -1ESJ - THIM_BACSU -
22 PsiBlast_CBE 95.9547%-103 - C2 -1C3Q 3.1 THIM_BACSU
1 PsiBlast_PDB 95.4847%-102 - C2 -1C3Q 2.9 THIM_BACSU
50 Fugue 95.2745% -96 - C2 -1C3Q 2.9 THIM_BACSU
2 PsiBlast_PDB 93.7047%-110 - C2 -1EKQ - THIM_BACSU -
28 HHSearch 93.6746%-107 - C2 -1EKQ - THIM_BACSU -
23 PsiBlast_CBE 93.2347%-104 - C2 -1ESQ 5.3 THIM_BACSU
4 PsiBlast_PDB 93.1247%-109 - C2 -1ESQ 5.2 THIM_BACSU
29 HHSearch 92.6344%-100 - C2 -3HPD - THIM_PYRHO -
24 PsiBlast_CBE 92.2147%-104 - C2 -1ESQ 5.4 THIM_BACSU
5 PsiBlast_PDB 91.4943%-101 - C2 -3HPD - THIM_PYRHO -
30 HHSearch 73.9725% -80 * C2 *3DZV - THIM_ENTFA -
6 PsiBlast_PDB 60.8626% -88 - C2 -3DZV - THIM_ENTFA -
35 HHSearch 55.5819% -92 - C2 -3RSS - NNR_THEMA -
38 HHSearch 55.3620% -95 - C2 -1UB0 - ? -
43 HHSearch 52.1122% -87 - C2 -2I5B - PDXK_BACSU -
53 Fugue 51.6617% -60 - C2 -1JXH - THID_SALTY -
11 PsiBlast_PDB 51.0123% -91 - C2 -3RS9 - NNR_THEMA -