@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0342: (2016-03-14 )
MSRIDEQMVNSIRVLSMDMIEKANSGHPGLPMGAAPMAFSLWKNHLKFNPEHPTWFNRDRFVLSAGHGSAMLYSLLHLFGYDLPMSELKNFRQTGSKTPGHPEFGHTVGVDATTGPLGQGFAMGVGMAMAEAHLGAKFNQPEFPVVDHNTYVLCGDGCLMEGISYEAASLAGHLKLGKLVVLYDSNDISLDGDLNESFSEDIELRFRAAGWQTLRVDDGNDLDALDAAIHLAKTEKSRPTLIEVKTVIGYGSPGKAGKSAAHGSPLGEKELKLAKEAYDWQMPPFELPKTVENQKEFYHSKGRASESSWLRTFNAYKQKYPALAESLQHLMDDNLTADWDAELPVFDENADKPVATREVSGIILQELEKKLPNLFGGAADLASSNKTHLKASERFAPGNYAAKNISFGVREFAMGAAVNGMTLHGGVQAFGATFFVFSDYLRSAIRSAALMGIPSTFIMTHDSIAVGEDGPTHEPIEHLASFRAMPGLHVIRPADGNETVEAYRFAFTQKEQPTMLVLSRQNLPILPNSAAKAKTGLAKGAYILADSPLDKLDIILLASGSEVHLMTAVRDNLAKKGFGARVVSMPSFDLFDKQSPEYKESILPKAVKKRFAAEMGASYGWHKYLGDSGEILAIDSFGMSGPGDELAERFGFTVENLTELALKQL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TPP_A_3(4C7X)
?
[Raw transfer]
52 HHSearch 97.3958% -77 - C1 -3M49 - ? -
1 PsiBlast_PDB 96.5357% -79 - C1 -3HYL - ? -
2 PsiBlast_PDB 96.1357% -79 - C1 -3M49 - ? -
3 PsiBlast_PDB 94.8453% -76 - C1 -4C7V - ? -
10 PsiBlast_PDB 93.8347% -75 - C1 -1QGD - TKT1_ECOLI -
4 PsiBlast_PDB 93.6453% -75 - C1 -4C7X 6.0 ?
26 PsiBlast_CBE 93.3247% -73 - C1 -1QGD - TKT1_ECOLI -
9 PsiBlast_PDB 93.2747% -73 - C1 -2R8P - TKT1_ECOLI -
24 PsiBlast_CBE 93.2147% -74 - C1 -2R8O - TKT1_ECOLI -
25 PsiBlast_CBE 93.2047% -73 - C1 -2R5N - TKT1_ECOLI -
8 PsiBlast_PDB 93.2047% -74 - C1 -2R8O - TKT1_ECOLI -
7 PsiBlast_PDB 93.1447% -74 - C1 -2R5N - TKT1_ECOLI -
23 PsiBlast_CBE 93.0147% -73 - C1 -2R8P - TKT1_ECOLI -
13 PsiBlast_PDB 91.2446% -76 - C1 -1TRK - TKT1_YEAST -
22 PsiBlast_CBE 91.1848% -75 - C1 -1ITZ - TKTC_MAIZE -
21 PsiBlast_CBE 90.9848% -76 - C1 -1ITZ - TKTC_MAIZE -
5 PsiBlast_PDB 90.9748% -76 - C1 -1ITZ - TKTC_MAIZE -
34 PsiBlast_CBE 90.2946% -74 - C1 -1AY0 - TKT1_YEAST -
27 PsiBlast_CBE 90.1849% -70 - C1 -3UPT - ? -
50 HHSearch 90.1449% -75 - C1 -1ITZ - TKTC_MAIZE -