@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0345: (2016-03-14 )
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_A_3(3HEE)
?
[Raw transfer]




R5P_B_4(3HEE)
?
[Raw transfer]




MLA_A_2(3SGW)
RPIB_COCIM
[Raw transfer]




RB5_A_3(3PH3)
?
[Raw transfer]




RB5_B_4(3PH3)
?
[Raw transfer]




GOL_B_4(3HE8)
?
[Raw transfer]




AOS_B_4(3PH4)
?
[Raw transfer]




GOL_A_3(3HE8)
?
[Raw transfer]




GOL_A_3(3HE8)
?
[Raw transfer]




1 PsiBlast_PDB 95.3247%-115 - C10 -3PH4 - ? -
42 HHSearch 94.9047%-111 - C10 -3PH3 2.1 ?
4 PsiBlast_PDB 94.9047%-109 - C10 -3HEE 2.1 ?
2 PsiBlast_PDB 94.7847%-113 - C10 -3PH3 - ? -
24 PsiBlast_CBE 94.4647%-112 - C10 -3HE8 2.4 ?
21 PsiBlast_CBE 94.4147%-111 - C10 -3PH4 1.9 ?
40 HHSearch 94.2947%-109 - C10 -3HE8 2.3 ?
3 PsiBlast_PDB 94.1647%-110 - C10 -3HE8 2.3 ?
22 PsiBlast_CBE 94.0847%-113 - C10 -3PH3 1.9 ?
23 PsiBlast_CBE 93.7847%-111 - C10 -3HEE 3.1 ?
6 PsiBlast_PDB 89.4842%-105 - C10 -1NN4 - RPIB_ECOLI -
39 HHSearch 88.7441%-103 * C10 *2VVR - RPIB_ECOLI -
5 PsiBlast_PDB 88.5342%-104 - C10 -2VVR - RPIB_ECOLI -
9 PsiBlast_PDB 86.5540%-118 - C10 -3S5P - ? -
25 PsiBlast_CBE 85.8940%-122 - C10 -3S5P - ? -
8 PsiBlast_PDB 85.7538%-108 - C10 -3SGW 2.8 RPIB_COCIM
10 PsiBlast_PDB 85.3338%-110 - C10 -3QD5 - RPIB_COCIM -
43 HHSearch 85.1637%-117 - C10 -3S5P - ? -
7 PsiBlast_PDB 84.8738%-107 - C10 -3SDW - RPIB_COCIM -
16 PsiBlast_PDB 84.1335%-112 - C10 -4EM8 - ? -