@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0347: (2016-03-14 )
MSELVMDSAFFGHVLQDMGALIEKERDYLTGLDSDIGDGDHGINLSIGFREVNKQLDELLAVSPDIATLLKKSGMILLGKVGGASGPLYGSFFMKCGADIPGKTEVNFDELCGMIINGAAAVQHRGKAELGDKTMMDAFLPGVEVLQNRDANAEPIETFSTFVDAMHAGAQSTIPLIAKKGRALRLGERAIGHLDPGSESSWMLMNIILENLKKAV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_2(2BTD)
DHAL_ECOLI
[Raw transfer]




ADP_B_4(3PNL)
DHAL_ECOLI
[Raw transfer]




ADP_A_9(3CR3)
DHAL_LACLA
[Raw transfer]




ADP_A_9(3CR3)
DHAL_LACLA
[Raw transfer]




23 PsiBlast_CBE 97.8643% -62 - C7 -4LRZ - DHAL_ECOLI -
2 PsiBlast_PDB 96.7843% -62 - C7 -3PNL 7.3 DHAL_ECOLI
3 PsiBlast_PDB 96.7543% -63 - C7 -4LRZ - DHAL_ECOLI -
22 PsiBlast_CBE 96.4443% -64 - C7 -4LRZ - DHAL_ECOLI -
21 PsiBlast_CBE 96.2743% -64 - C7 -4LRZ - DHAL_ECOLI -
1 PsiBlast_PDB 96.1143% -64 - C7 -2BTD 6.6 DHAL_ECOLI
24 HHSearch 90.4538% -67 - C7 -3CR3 7.4 DHAL_LACLA
34 Fugue 85.1926% -55 - C7 -1UN8 - DHAK_CITFR -
4 PsiBlast_PDB 82.0138% -40 - C7 -3CR3 7.4 DHAL_LACLA
25 HHSearch 81.9528% -56 - C7 -1UN8 - DHAK_CITFR -
6 PsiBlast_PDB 79.0326% -48 - C7 -1UN8 - DHAK_CITFR -
5 PsiBlast_PDB 78.9426% -47 - C7 -1UN9 - DHAK_CITFR -
43 Fugue 59.7216% -60 - C6 -1QLT - VAOX_PENSI -
39 Fugue 59.1114% -30 * C6 *4ART - Y273_ATV -
38 Fugue 57.8215% -84 * C5 *4KXR - ? -
36 Fugue 54.9720% -67 - C3 -4PHR - ? -
35 Fugue 50.5613% -70 * C9 *1GHE - TTR_PSEAJ -
37 Fugue 47.3412% -54 - C9 -1ZX4 - ? -
14 PsiBlast_PDB 46.4026% -18 - C7 -2HP1 - GSA_SYNP6 -
12 PsiBlast_PDB 45.8426% -21 - C7 -2HOY - GSA_SYNP6 -