@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0996: (2016-03-20 )
MLKRQKASPVGELFITIEDGCIMNISYDKPRNWELLDGNIIEKELFQELMIQLASYFEGERENFDLPMLLKGTDFQKKVWQALSEIPYGAVVSYKDIAISAGSPKAVQAVGQANRANPIPIIIPCHRCVKSNGELGGYNGTDVDKKQYLLALEKGLSLS

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_1(1YFH)
MGMT_HUMAN
[Raw transfer]

-

NACID_F_3(1YFH)
MGMT_HUMAN
[Raw transfer]

-

NACID_E_3(1T39)
MGMT_HUMAN
[Raw transfer]

-

NACID_B_1(1T38)
MGMT_HUMAN
[Raw transfer]

-

NACID_F_3(1YFH)
MGMT_HUMAN
[Raw transfer]

-

NACID_C_1(1T39)
MGMT_HUMAN
[Raw transfer]

-

1 PsiBlast_PDB 94.4641%-119 - C5 -4BHB - OGT_MYCTU -
4 PsiBlast_PDB 92.7936%-138 - C5 -4ZYE - ? -
2 PsiBlast_PDB 92.7841%-105 - C5 -4BHC - OGT_MYCTU -
10 PsiBlast_PDB 90.2535%-132 - C5 -4ZYH - ? -
12 PsiBlast_PDB 89.5035%-124 - C5 -4ZYG - ? -
9 PsiBlast_PDB 88.3335%-124 - C5 -4ZYD - ? -
25 HHSearch 86.1332% -96 - C5 -1SFE - ADA_ECOLI -
27 HHSearch 84.8632% -93 * C5 *1EH6 - MGMT_HUMAN -
26 HHSearch 78.5927%-100 - C5 -1WRJ - OGT_SULTO -
3 PsiBlast_PDB 77.9942%-104 - C5 -1SFE - -
7 PsiBlast_PDB 75.4040%-100 - C5 -1EH6 - MGMT_HUMAN -
5 PsiBlast_PDB 74.7140% -98 - C5 -1T39 6.0 MGMT_HUMAN
23 PsiBlast_CBE 74.5340%-103 - C5 -1YFH 3.8 MGMT_HUMAN
21 PsiBlast_CBE 74.4440% -95 - C5 -1T39 5.7 MGMT_HUMAN
6 PsiBlast_PDB 73.3542% -91 - C5 -1QNT - MGMT_HUMAN -
24 PsiBlast_CBE 73.1138% -90 - C5 -3KZY - ? -
13 PsiBlast_PDB 72.4638% -92 - C5 -3KZY - ? -
17 PsiBlast_PDB 72.3932%-101 - C5 -1WRJ - OGT_SULTO -
8 PsiBlast_PDB 72.2340% -95 - C5 -1YFH 7.0 MGMT_HUMAN
22 PsiBlast_CBE 71.6140%-100 - C5 -1YFH 5.0 MGMT_HUMAN
11 PsiBlast_PDB 71.5641% -83 - C5 -1T38 8.1 MGMT_HUMAN