@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1075: (2016-03-21 )
MDKNIKVSFKHVSKEYDLYQNKSDKIKGLFLPKSKRVQSFWALRNVCFDVYDGETVGLIGINGSGKSTISNIMSGVIPPTQGEVVINGETSLIAIAVGLKGPLSGLENIRLKLLMHGLKGSQIDSLLPSIIEFADIGDFINQPIKNYSSGMRSRLGFAISVHTDPDILVVDEALSVGDQTFYQKCVDKINEFKAQGKTIVFVSHSLGQVKSLCDKIIWMHHGEVREIGDAAEVAEKYDEFVKWFNKQPNDFKKKYQKEQKEKQKLPQEKIYPTPNANKYKMGLFDKCFLVVLLALLVLFGSLISTGKSFMGLFSATDNKVEQVTKVDKRTDWK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMV)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]
27 Fugue 78.8222% -96 - C1 -3B60 - MSBA_SALTY -
4 PsiBlast_PDB 77.7625% -89 - C1 -2IT1 - ? -
21 Fugue 77.1421% -69 - C1 -1Z47 - ? -
35 HHSearch 76.5425%-108 - C1 -2IT1 - ? -
30 HHSearch 76.1227%-111 - C1 -1Z47 - ? -
3 PsiBlast_PDB 75.3226%-112 - C1 -1Z47 - ? -
34 HHSearch 74.1624%-111 - C1 -3TUI - METN_ECOLI -
1 PsiBlast_PDB 74.0428%-100 - C1 -1VPL - ? -
12 PsiBlast_PDB 73.7723% -98 - C1 -3DHW - METN_ECOLI -
5 PsiBlast_PDB 72.6925%-101 - C1 -1V43 - ? -
32 HHSearch 72.6124%-107 - C1 -1V43 - ? -
7 PsiBlast_PDB 72.1426% -98 - C1 -4YMS - ? -
25 Fugue 72.0819% -94 - C1 -3TUZ - METN_ECOLI -
6 PsiBlast_PDB 72.0525%-101 - C1 -1VCI - ? -
38 HHSearch 71.4424%-112 - C1 -3RLF - MALK_ECOLI -
8 PsiBlast_PDB 71.3526% -97 - C1 -4YMT - ? -
13 PsiBlast_PDB 71.2725%-116 - C1 -1Q1B - MALK_ECOLI -
9 PsiBlast_PDB 71.1126% -95 - C1 -4YMU 5.0 ?
10 PsiBlast_PDB 70.7826% -96 - C1 -4YMV 4.3 ?
11 PsiBlast_PDB 70.7626% -93 - C1 -4YMW - ? -