@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1207: (2016-03-22 )
LLKTEHISFQYEDGKQALTDVSIDLEKGNIIGLIGANGSGKSTLFMQLLGINKPSDGTVYFEGKPLAYTKKALFALRKKVSIVFQDPDQQIFYSNVRDDVAFALRNLGVSESEVEARVTKVLDIVGAKDFQHKPVQYLSYGQKKRVAIAGALVLDTDWLLLDEPTAGLDPIGKKIMMEIIERLASQGKKILISSHDIDLIYEICDYVYMLKDGSVLTDGETSSVFLEKSNIELAGLVQPWLIKLHQQAGYPLFKKEADFFAHTGKVTN

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMV)
?
[Raw transfer]



ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]



ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]



ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]



ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]
39 Fugue 86.6630%-106 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 86.1439%-108 - C1 -4MKI 4.8 ECFA2_CALS4
57 HHSearch 85.8541%-116 - C1 -3GFO - ECFA3_CLOP1 -
21 PsiBlast_CBE 85.1639%-107 - C1 -4MKI 4.3 ECFA2_CALS4
1 PsiBlast_PDB 84.7642%-113 - C1 -3GFO - ECFA3_CLOP1 -
29 PsiBlast_CBE 80.8832%-111 - C1 -3TUI - METN_ECOLI -
56 HHSearch 80.7033%-100 * C1 *3TUI - METN_ECOLI -
26 PsiBlast_CBE 79.9932%-113 - C1 -3TUZ - METN_ECOLI -
8 PsiBlast_PDB 79.8532%-114 - C1 -3TUZ - METN_ECOLI -
7 PsiBlast_PDB 79.2832%-109 - C1 -3TUI - METN_ECOLI -
67 HHSearch 79.0431%-109 - C1 -1B0U - HISP_SALTY -
22 PsiBlast_CBE 78.8934%-104 - C1 -4HLU 5.7 ECFA1_THEMA
30 PsiBlast_CBE 78.4932%-110 - C1 -3TUI - METN_ECOLI -
27 PsiBlast_CBE 77.3332%-108 - C1 -3TUZ - METN_ECOLI -
13 PsiBlast_PDB 77.2831%-105 - C1 -1OXV - ? -
10 PsiBlast_PDB 77.1031%-105 - C1 -1OXS - ? -
31 PsiBlast_CBE 76.8032%-111 - C1 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 76.7735%-108 - C1 -4HUQ - ECFA1_LACBA -
4 PsiBlast_PDB 76.7435% -97 - C1 -4HZU - ECFA1_LACBA -
14 PsiBlast_PDB 76.6830%-107 - C1 -1OXX - ? -
24 PsiBlast_CBE 76.2537%-103 - C1 -4HLU 4.9 ECFA2_THEMA
25 PsiBlast_CBE 76.0937%-103 - C1 -4HLU 4.6 ECFA2_THEMA
23 PsiBlast_CBE 69.6037%-112 - C1 -4ZIR 4.8 ECFA2_THEMA