@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1448: (2016-03-24 )
MTKTLVFGHKNPDTDTICSAISYAELKKAQGADIEAVRLGELNSETAFVLDYFQVTAPRLVQTVANEVSEVALVDHNERQQSVDDIDDVTVTAVVDHHRIANFETSDPLYYRAEPVGCTTTILLKMFRENEVEVSKTVAGLMLSAIISDTLLFQSPTCTEEDKVAAQKLAQIADVDIQSYGMEMLKAGADVSKKTVAELLLDAKEFNMNDNKVEIAQINVVDVNDVLSRRAEVEALMTQNIVDKGLDLYLFVITNILTNDSVGIAIGSKTAVVEEAYGVKFVENQAPLKGVVSRKKQVVPILTDTFAK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2PN_A_21(2HAW)
PPAC_BACSU
[Raw transfer]




2PN_A_21(2HAW)
PPAC_BACSU
[Raw transfer]




2PN_B_22(2HAW)
PPAC_BACSU
[Raw transfer]




2PN_A_6(2ENX)
PPAC_STRA5
[Raw transfer]




2PN_B_11(2ENX)
PPAC_STRA5
[Raw transfer]




GOL_B_11(1K20)
PPAC_STRGC
[Raw transfer]




GOL_A_12(1K20)
PPAC_STRGC
[Raw transfer]




GOL_A_12(1K20)
PPAC_STRGC
[Raw transfer]




1 PsiBlast_PDB 92.5763%-104 - C5 -1WPM - PPAC_BACSU -
2 PsiBlast_PDB 92.2363%-104 - C5 -2HAW 4.1 PPAC_BACSU
18 PsiBlast_CBE 91.7863%-103 - C5 -1WPM - PPAC_BACSU -
17 PsiBlast_CBE 91.6663%-103 - C5 -2HAW 4.2 PPAC_BACSU
25 HHSearch 91.3063%-100 - C5 -2HAW 4.1 PPAC_BACSU
3 PsiBlast_PDB 90.5063% -42 - C- -2IW4 - PPAC_BACSU -
4 PsiBlast_PDB 90.2162%-113 - C5 -1K23 - PPAC_BACSU -
21 PsiBlast_CBE 89.9152%-108 - C5 -1WPP - PPAC_STRGC -
35 Fugue 89.7351% -95 - C5 -1K20 2.7 PPAC_STRGC
19 PsiBlast_CBE 89.7063% -41 - C- -2IW4 - PPAC_BACSU -
6 PsiBlast_PDB 89.5752%-106 - C5 -1WPP - PPAC_STRGC -
7 PsiBlast_PDB 89.3952% -96 - C5 -1K20 2.7 PPAC_STRGC
22 PsiBlast_CBE 89.3052% -95 - C5 -1K20 2.5 PPAC_STRGC
5 PsiBlast_PDB 88.7552%-102 - C5 -2ENX 3.2 PPAC_STRA5
20 PsiBlast_CBE 88.0852%-100 - C5 -2ENX 3.8 PPAC_STRA5
8 PsiBlast_PDB 87.3048%-100 - C5 -1I74 - PPAC_STRMU -
26 HHSearch 81.3843% -85 - C5 -2EB0 - PPAC_METJA -
24 PsiBlast_CBE 81.1241% -95 - C5 -2EB0 - PPAC_METJA -
10 PsiBlast_PDB 80.8741% -94 - C5 -2EB0 - PPAC_METJA -
23 PsiBlast_CBE 75.3166%-113 - C5 -1WPN - PPAC_BACSU -