@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1454: (2016-03-25 )
MSDKTKNTKPVAELSVEQVKEALIEEGKKKGILTYAKIAARLAPFTLDSDQMDEYLEHVGEAGIEVSDDADDEDPDETELVKEETESFDLTDMSVPPGVKINDPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_8(4OIO)
?
[Raw transfer]
-
NACID_H_8(4Q5S)
?
[Raw transfer]
-
NACID_H_8(4OIN)
?
[Raw transfer]
-
NACID_H_8(4OIP)
?
[Raw transfer]
-
NACID_H_13(4G7Z)
?
[Raw transfer]
-
NACID_H_8(4G7H)
?
[Raw transfer]
-
NACID_H_8(4OIQ)
?
[Raw transfer]
-
NACID_H_8(4G7O)
?
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
?
[Raw transfer]
-
NACID_H_8(4OIR)
?
[Raw transfer]
-
NACID_B_2(3UGP)
SIGA_THEAQ
[Raw transfer]
-
NACID_B_2(3UGO)
SIGA_THEAQ
[Raw transfer]
-
NACID_B_2(3UGO)
SIGA_THEAQ
[Raw transfer]
-
NACID_R_15(4G7Z)
?
[Raw transfer]
-
NACID_R_17(4G7O)
?
[Raw transfer]
-
NACID_R_16(4G7H)
?
[Raw transfer]
-
NACID_D_1(4KI2)
SIGA_THEAQ
[Raw transfer]
-
NACID_E_2(4KI2)
SIGA_THEAQ
[Raw transfer]
-
59 HHSearch 88.4656% -88 - C6 -2A6H - ? -
81 Fugue 85.1248% -70 - C5 -4LLG - RPOD_ECOLI -
35 PsiBlast_CBE 84.7667% -93 - C6 -4OIR 10.4 ?
18 PsiBlast_PDB 84.3762%-100 - C6 -4JKR - RPOD_ECOLI -
43 PsiBlast_CBE 84.0567% -93 - C6 -4G7O 11.1 ?
42 PsiBlast_CBE 84.0067% -92 - C6 -4G7O 11.8 ?
15 PsiBlast_PDB 83.6565% -97 - C6 -4ZH2 - ? -
16 PsiBlast_PDB 83.6365% -97 - C6 -4ZH3 - ? -
41 PsiBlast_CBE 83.6167% -93 - C6 -4G7Z 11.8 ?
19 PsiBlast_PDB 83.5662% -95 - C6 -4YLN - RPOD_ECOLI -
17 PsiBlast_PDB 83.5165% -97 - C6 -4ZH4 - ? -
36 PsiBlast_CBE 83.4767% -94 - C6 -4OIQ 11.2 ?
39 PsiBlast_CBE 83.4667% -96 - C6 -4OIN 10.6 ?
7 PsiBlast_PDB 83.3865% -98 - C6 -4LK1 - RPOD_ECOLI -
45 PsiBlast_CBE 83.3067% -95 - C6 -4G7H 11.8 ?
44 PsiBlast_CBE 83.2567% -92 - C6 -4G7H 11.7 ?
27 PsiBlast_CBE 83.2467% -95 - C6 -4Q4Z 10.1 ?
38 PsiBlast_CBE 82.9767% -93 - C6 -4OIO 11.8 ?
8 PsiBlast_PDB 82.7665% -94 - C6 -4LLG - RPOD_ECOLI -
40 PsiBlast_CBE 82.7067% -90 - C6 -4G7Z 12.0 ?
37 PsiBlast_CBE 82.6867% -94 - C6 -4OIP 11.8 ?
26 PsiBlast_CBE 79.6667% -90 - C6 -4Q5S 12.8 ?
62 HHSearch 63.0569%-101 - C6 -3UGO 14.9 SIGA_THEAQ
48 PsiBlast_CBE 59.3872% -96 - C6 -4KI2 12.4 SIGA_THEAQ
51 PsiBlast_CBE 50.9572% -94 - C6 -3UGO 14.7 SIGA_THEAQ
50 PsiBlast_CBE 50.7872% -89 - C6 -3UGP 14.5 SIGA_THEAQ
49 PsiBlast_CBE 49.3072% -92 - C6 -4KI2 10.5 SIGA_THEAQ