@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1564: (2016-03-26 )
MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDEFVHMLVGQEIEGVRRRGKFLLFDLTNCTILSHLRMEGKFRLMDENEEVSKHTHIIFHFEDHTELRFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTLTDFATGVKKTSRAIKTALLDQKLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFKATKSIMTEAVALGGSTVRTYVNSQGKLGQYQNKLKVYGKTDEPCVVCGTPIEKIKLNGRGTHFCPNCQK

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_B_2(3U6Q)
?
[Raw transfer]
-
NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_B_2(3GQ5)
?
[Raw transfer]
-
TRS_B_2(1TDH)
NEIL1_HUMAN
[Raw transfer]



GOL_A_2(3TWL)
FPG_ARATH
[Raw transfer]



NACID_H_7(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_B_2(2XZF)
FPG_LACLC
[Raw transfer]
-
CHAIN_D_4(4CIS)
?
[Raw transfer]
-
BU3_A_6(4CIS)
?
[Raw transfer]



GOL_D_8(3SAR)
?
[Raw transfer]



NACID_F_3(1K82)
FPG_ECOLI
[Raw transfer]
-
GOL_A_6(1PM5)
FPG_LACLC
[Raw transfer]



NACID_C_3(4PDG)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1PJI)
FPG_LACLC
[Raw transfer]
-
NACID_C_2(1XC8)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(2XZF)
FPG_LACLC
[Raw transfer]
-
NACID_B_2(4PDG)
FPG_LACLC
[Raw transfer]
-
NACID_C_2(1TDZ)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1NNJ)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1PJJ)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PCZ)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(2XZU)
FPG_LACLC
[Raw transfer]
-
NACID_C_1(3C58)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1PM5)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PD2)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PDI)
FPG_LACLC
[Raw transfer]
-
CHAIN_C_3(4CIS)
?
[Raw transfer]
-
NACID_B_2(4G4R)
?
[Raw transfer]
-
NACID_K_6(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_C_3(3U6P)
?
[Raw transfer]
-
NACID_B_2(3SBJ)
?
[Raw transfer]
-
NACID_B_2(3GQ4)
?
[Raw transfer]
-
NACID_B_1(1L1T)
?
[Raw transfer]
-
NACID_B_2(3U6L)
?
[Raw transfer]
-
NACID_B_2(3SAT)
?
[Raw transfer]
-
NACID_C_3(3U6P)
?
[Raw transfer]
-
NACID_B_1(1L2D)
?
[Raw transfer]
-
NACID_B_2(3SAW)
?
[Raw transfer]
-
NACID_B_1(1L2B)
?
[Raw transfer]
-
NACID_B_1(1L2C)
?
[Raw transfer]
-
NACID_B_2(3U6M)
?
[Raw transfer]
-
NACID_B_1(1L1Z)
?
[Raw transfer]
-
NACID_B_2(3GP1)
?
[Raw transfer]
-
NACID_B_1(2F5N)
?
[Raw transfer]
-
NACID_B_1(2F5S)
?
[Raw transfer]
-
NACID_B_1(1L1Z)
?
[Raw transfer]
-
NACID_B_2(3JR5)
?
[Raw transfer]
-
NACID_C_1(2F5P)
?
[Raw transfer]
-
NACID_B_1(1R2Y)
?
[Raw transfer]
-
NACID_B_1(1R2Z)
?
[Raw transfer]
-
NACID_B_2(3GQ3)
?
[Raw transfer]
-
NACID_B_2(3GPY)
?
[Raw transfer]
-
NACID_B_2(3GO8)
?
[Raw transfer]
-
NACID_B_2(3GPU)
?
[Raw transfer]
-
NACID_B_2(3GPP)
?
[Raw transfer]
-
NACID_C_3(3U6O)
?
[Raw transfer]
-
NACID_C_3(3U6D)
?
[Raw transfer]
-
NACID_B_2(4G4O)
?
[Raw transfer]
-
NACID_C_2(3SAR)
?
[Raw transfer]
-
NACID_B_2(3U6C)
?
[Raw transfer]
-
NACID_B_2(4G4Q)
?
[Raw transfer]
-
NACID_C_2(3SAV)
?
[Raw transfer]
-
NACID_C_3(3U6E)
?
[Raw transfer]
-
NACID_B_2(3U6S)
?
[Raw transfer]
-
NACID_B_1(2F5Q)
?
[Raw transfer]
-
NACID_B_2(3JR4)
?
[Raw transfer]
-
NACID_B_2(3GPX)
?
[Raw transfer]
-
NACID_B_1(2F5O)
?
[Raw transfer]
-
NACID_B_2(4G4N)
?
[Raw transfer]
-
NACID_B_2(3SAU)
?
[Raw transfer]
-
NACID_B_2(3SAS)
?
[Raw transfer]
-
95 Fugue 84.6947% -77 * C11 *1L1Z 4.3 ?
3 PsiBlast_PDB 84.5149% -76 - C11 -1L2B 6.0 ?
2 PsiBlast_PDB 84.4949% -77 - C11 -1L1Z 4.3 ?
12 PsiBlast_PDB 84.1148% -70 - C11 -2F5S 5.3 ?
7 PsiBlast_PDB 83.8248% -71 - C11 -1R2Z 4.4 ?
24 PsiBlast_CBE 83.7648% -84 - C11 -3GPP 6.9 ?
17 PsiBlast_PDB 83.7548% -70 - C11 -3JR5 8.3 ?
18 PsiBlast_PDB 83.7048% -72 - C11 -3GPY 5.4 ?
1 PsiBlast_PDB 83.3749% -79 - C11 -1L1T 3.6 ?
19 PsiBlast_PDB 83.2048% -71 - C11 -3GQ4 4.6 ?
26 PsiBlast_CBE 83.0848% -83 - C11 -3SAT 4.5 ?
13 PsiBlast_PDB 83.0548% -85 - C11 -3SAR 7.1 ?
6 PsiBlast_PDB 82.9348% -71 - C11 -1R2Y 5.0 ?
25 PsiBlast_CBE 82.8648% -87 - C11 -3SAW 7.3 ?
4 PsiBlast_PDB 82.8549% -77 - C11 -1L2C 5.0 ?
11 PsiBlast_PDB 82.6048% -67 - C11 -2F5Q 5.3 ?
10 PsiBlast_PDB 82.4748% -80 - C11 -2F5P 7.0 ?
15 PsiBlast_PDB 82.4348% -87 - C11 -3SAV 7.5 ?
23 PsiBlast_CBE 82.3048% -86 - C11 -3GQ5 7.1 ?
21 PsiBlast_CBE 82.3048% -87 - C11 -3SBJ 4.9 ?
8 PsiBlast_PDB 82.2648% -84 - C11 -2F5N 6.1 ?
14 PsiBlast_PDB 82.2348% -86 - C11 -3SAU 6.0 ?
16 PsiBlast_PDB 82.1348% -76 - C11 -3JR4 4.0 ?
5 PsiBlast_PDB 82.1049% -78 - C11 -1L2D 5.4 ?
9 PsiBlast_PDB 81.9448% -83 - C11 -2F5O 6.3 ?
27 PsiBlast_CBE 81.8748% -84 - C11 -3SAS 3.1 ?
20 PsiBlast_PDB 81.8648% -85 - C11 -3GP1 6.9 ?
30 PsiBlast_CBE 81.6847% -86 - C11 -3U6Q 6.1 ?
22 PsiBlast_CBE 81.6748% -84 - C11 -4G4N 6.4 ?
36 PsiBlast_CBE 81.6547% -85 - C11 -3U6D 8.9 ?
33 PsiBlast_CBE 81.2747% -83 - C11 -3U6M 4.8 ?
37 PsiBlast_CBE 81.0347% -84 - C11 -3U6C 6.6 ?
35 PsiBlast_CBE 80.9147% -83 - C11 -3U6E 6.7 ?
29 PsiBlast_CBE 80.8047% -85 - C11 -3U6S 6.4 ?
45 PsiBlast_CBE 80.7344% -83 - C11 -3GO8 7.2 ?
46 PsiBlast_CBE 80.7244% -84 - C11 -3GPU 7.6 ?
28 PsiBlast_CBE 80.4448% -82 - C11 -4G4Q 4.4 ?
38 PsiBlast_CBE 80.4047% -86 - C11 -4G4O 6.9 ?
41 PsiBlast_CBE 80.3844% -85 - C11 -3GPX 7.3 ?
34 PsiBlast_CBE 80.3547% -84 - C11 -3U6L 6.4 ?
31 PsiBlast_CBE 80.3447% -86 - C11 -3U6P 7.5 ?
39 PsiBlast_CBE 80.2647% -82 - C11 -4G4R 4.0 ?
32 PsiBlast_CBE 80.1947% -84 - C11 -3U6O 7.8 ?
40 PsiBlast_CBE 80.0544% -85 - C11 -3GQ3 6.9 ?
43 PsiBlast_CBE 80.0043% -73 - C11 -4CIS 4.9 ?
52 PsiBlast_CBE 79.4142% -71 - C11 -1XC8 5.6 FPG_LACLC
44 PsiBlast_CBE 79.1943% -73 - C11 -1TDZ 6.0 FPG_LACLC
55 PsiBlast_CBE 78.9442% -67 - C11 -4PCZ 4.5 FPG_LACLC
53 PsiBlast_CBE 78.8442% -68 - C11 -1PM5 5.2 FPG_LACLC
47 PsiBlast_CBE 78.7942% -72 - C11 -4PDI 6.1 FPG_LACLC
42 PsiBlast_CBE 78.7243% -65 - C11 -4CIS 7.1 ?
67 HHSearch 78.7047% -80 - C11 -3U6P 7.3 ?
49 PsiBlast_CBE 78.3342% -67 - C11 -3C58 5.8 FPG_LACLC
54 PsiBlast_CBE 78.3042% -71 - C11 -1PJI 5.4 FPG_LACLC
51 PsiBlast_CBE 78.2942% -69 - C11 -2XZF 8.5 FPG_LACLC
50 PsiBlast_CBE 78.2642% -66 - C11 -2XZU 4.6 FPG_LACLC
48 PsiBlast_CBE 78.1542% -66 - C11 -4PDG 7.6 FPG_LACLC
58 PsiBlast_CBE 78.0842% -70 - C11 -4PD2 5.8 FPG_LACLC
57 PsiBlast_CBE 78.0442% -70 - C11 -1NNJ 5.5 FPG_LACLC
56 PsiBlast_CBE 77.9342% -69 - C11 -1PJJ 5.5 FPG_LACLC
61 PsiBlast_CBE 77.6937% -73 - C11 -1K82 6.3 FPG_ECOLI
63 PsiBlast_CBE 77.4537% -73 - C11 -1K82 5.9 FPG_ECOLI
64 PsiBlast_CBE 76.7837% -72 - C11 -1K82 5.6 FPG_ECOLI
68 HHSearch 76.2837% -73 - C11 -1K82 5.6 FPG_ECOLI
62 PsiBlast_CBE 75.9637% -71 - C11 -1K82 6.2 FPG_ECOLI
70 HHSearch 71.3331% -81 - C11 -3TWL 2.9 FPG_ARATH