@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1595: (2016-03-26 )
MIEIKKMTGTKEENYALALKQVQAMIHGEPNLIANLSNVSSIINQALSDINWVGFYLLEKETNQLVLGPFQGLPACIRIPLGKGVCGSAASDQKTYIVENVHDFPGHIACDAASNSEIVLPIVKNNQLLGVLDIDSPLFNRFNEVDQLWLEKIRDAIVQEIN

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MES_C_3(1VHM)
MSRC_ECOLI
[Raw transfer]



MES_D_4(1VHM)
MSRC_ECOLI
[Raw transfer]



MES_D_4(1VHM)
MSRC_ECOLI
[Raw transfer]



SME_A_3(3MMH)
?
[Raw transfer]



SME_B_15(3MMH)
?
[Raw transfer]



SME_A_3(3MMH)
?
[Raw transfer]



IPA_A_2(3KSI)
?
[Raw transfer]



SME_A_3(3RFB)
?
[Raw transfer]



SME_B_4(3RFB)
?
[Raw transfer]



SME_A_3(3RFB)
?
[Raw transfer]



SME_B_4(3KSG)
?
[Raw transfer]



SME_A_3(3KSG)
?
[Raw transfer]



MRD_B_18(3MMH)
?
[Raw transfer]



SME_B_4(3KO6)
FRMSR_YEAST
[Raw transfer]



SME_A_3(3KO6)
FRMSR_YEAST
[Raw transfer]
52 Fugue 94.9344%-118 - C1 -1F5M - FRMSR_YEAST -
3 PsiBlast_PDB 94.1452%-122 - C1 -3KSI 2.9 ?
31 HHSearch 93.9250%-128 - C1 -1VHM 3.5 MSRC_ECOLI
24 PsiBlast_CBE 93.9053%-127 - C1 -1VHM 3.2 MSRC_ECOLI
5 PsiBlast_PDB 93.8053%-129 - C1 -1VHM 3.5 MSRC_ECOLI
2 PsiBlast_PDB 92.9352%-121 - C1 -3KSH - ? -
21 PsiBlast_CBE 92.4552%-114 - C1 -3KSF - ? -
34 HHSearch 92.1453%-127 - C1 -3KSH - ? -
1 PsiBlast_PDB 91.9852%-115 - C1 -3KSF - ? -
7 PsiBlast_PDB 90.9447%-125 - C1 -3KO6 3.1 FRMSR_YEAST
22 PsiBlast_CBE 90.7852%-110 - C1 -3KSF - ? -
25 PsiBlast_CBE 90.6847%-127 - C1 -3KO6 2.9 FRMSR_YEAST
6 PsiBlast_PDB 90.1947%-122 - C1 -1F5M - FRMSR_YEAST -
30 HHSearch 88.9739%-116 - C1 -3MMH 3.8 ?
36 HHSearch 88.8142%-116 - C1 -3RFB 3.3 ?
53 Fugue 88.6238%-125 - C1 -1F5M - FRMSR_YEAST -
26 PsiBlast_CBE 88.5447%-120 - C1 -1F5M - FRMSR_YEAST -
4 PsiBlast_PDB 86.6254%-112 - C1 -3KSG 3.9 ?
23 PsiBlast_CBE 86.5254%-112 - C1 -3KSG 3.7 ?
27 PsiBlast_CBE 84.6744%-109 - C1 -3RFB 3.2 ?
8 PsiBlast_PDB 83.9344%-108 - C1 -3RFB 3.3 ?
28 PsiBlast_CBE 82.6341%-112 - C1 -3MMH 3.7 ?
9 PsiBlast_PDB 82.5541%-111 - C1 -3MMH 3.8 ?