@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1634: (2016-03-27 )
MAIKENAAQEVLEVQKVIDRLADNGQKALKAFESYNQEQVDNIVHAMALAGLDQHMPLAKLAVEETGRGLYEDKCIKNIFATEYIWNNIKNNKTVGVINEDLQTGVIEIAEPVGVVAGVTPVTNPTSTTLFKAIIAIKTRNPIIFAFHPSAQRCSSAAAKVVYDAAIAAGAPEHCIQWVEKPSLEATKQLMNHDKVALVLATGGAGMVKSAYSTGKPALGVGPGNVPAYIDKTAKIKRSVNDIILSKSFDQGMICASEQAVIVDKEVAKEVKAEMEANNCYFVKGAEFKKLESYVINPEKGTLNPDVVGKSPAWIANQAGFKVPEDTKILVAEIKGVGDKYPLSHEKLSPVLAFIEAANQAEAFDRCEEMLVYGGLGHSAVIHSTDKEVQKAFGIRMKACRIIVNAPSAQGGIGDIYNGFIPSLTLGCGSYGKNSVSQNVSATNLLNVKRIADRRNNMQWFKLPPKIFFEKYSTQYLQKMEGVERVFIVTDPGMVQFKYVDVVIEHLKKRGNDVSYQVFADVEPDPSDVTVYKGAELMKDFKPDTIIALGGGSAMDAAKGMWLFYEHPEASFFGLKQKFLDIRKRTFKYPKLGGKAKFVAIPTTSGTGSEVTPFAVITDKENNIKYPLADYELTPDVAIVDAQYVTTVPAHITADTGMDVLTHAIESYVSVMASDYTRGLSIRAIELVFENLRESVLTGDPDAREKMHNASALAGMAFANAFLGINHSLAHKIGPEFHIPHGRANAILMPHVIRYNALKPKKHALFPRYESFRADEDYARISRIIGFPAATTEEGVKSLVDEIIKLGKDVGIDMSLKGQNVAKKDLDAVVDTLADRAFMDQCTTANPKQPLVSELKEIYLEAYKGV

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_7(2BI4)
FUCO_ECOLI
[Raw transfer]



NAP_A_5(1O2D)
?
[Raw transfer]



NAD_B_7(2BL4)
FUCO_ECOLI
[Raw transfer]



NAD_A_4(2BL4)
FUCO_ECOLI
[Raw transfer]



NAD_A_4(2BI4)
FUCO_ECOLI
[Raw transfer]



APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]



APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]



NAP_A_7(1VHD)
?
[Raw transfer]



UNL_A_2(3RF7)
?
[Raw transfer]
2 PsiBlast_PDB 94.0944% -75 - C1 -3K9D - ? -
21 PsiBlast_CBE 93.8344% -75 - C1 -3K9D - ? -
72 Fugue 93.4743% -74 - C1 -3K9D - ? -
22 PsiBlast_CBE 91.8844% -74 - C1 -3K9D - ? -
1 PsiBlast_PDB 87.8147% -81 - C1 -3MY7 - ? -
70 HHSearch 81.2239% -61 - C1 -3K9D - ? -
71 HHSearch 79.7845% -64 - C1 -3MY7 - ? -
60 HHSearch 78.0936% -68 - C2 -1RRM 6.5 FUCO_ECOLI
69 HHSearch 77.7134% -73 * C2 *3BFJ - DHAT_KLEPN -
7 PsiBlast_PDB 76.5233% -74 - C2 -3OWO - ADH2_ZYMMO -
59 HHSearch 75.9333% -74 - C2 -3OX4 - ADH2_ZYMMO -
8 PsiBlast_PDB 75.9333% -76 - C2 -3OX4 - ADH2_ZYMMO -
41 PsiBlast_CBE 75.9233% -75 - C2 -3BFJ - DHAT_KLEPN -
3 PsiBlast_PDB 75.8735% -77 - C2 -2BI4 6.5 FUCO_ECOLI
5 PsiBlast_PDB 75.4835% -68 - C2 -1RRM 6.5 FUCO_ECOLI
9 PsiBlast_PDB 75.4233% -77 - C2 -4FR2 - ? -
39 PsiBlast_CBE 75.3733% -76 - C2 -3BFJ - DHAT_KLEPN -
40 PsiBlast_CBE 75.2533% -74 - C2 -3BFJ - DHAT_KLEPN -
46 PsiBlast_CBE 75.0733% -73 - C2 -3OX4 - ADH2_ZYMMO -
44 PsiBlast_CBE 74.8133% -70 - C2 -3OX4 - ADH2_ZYMMO -
24 PsiBlast_CBE 74.1035% -75 - C2 -2BI4 7.6 FUCO_ECOLI
4 PsiBlast_PDB 74.0735% -75 - C2 -2BL4 6.2 FUCO_ECOLI
23 PsiBlast_CBE 73.7735% -73 - C2 -2BL4 7.8 FUCO_ECOLI
11 PsiBlast_PDB 44.0632% -44 - C2 -1O2D 9.8 ?
10 PsiBlast_PDB 43.5632% -42 - C2 -1VHD 8.2 ?