@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1737: (2016-03-28 )
LLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNASWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVAIMETNKMDAIIAVGGGKIADVCKAAAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMILDSPKELLIAGIGDTLAKWYEADVIINSLPTKSVEIEIAHFAAKMCRDNLLQYSGEALAAMDKQVLNEAFVKIIETNILVGGMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGNKVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLAEETLVDVSRRATEPHETIHMMPGEMTADVVLNAMKQLEDSMAMKRVTK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




GOL_B_9(4MCA)
?
[Raw transfer]




GOL_A_5(4MCA)
?
[Raw transfer]




GOL_A_8(1TA9)
GLD1_SCHPO
[Raw transfer]




GOL_A_8(1TA9)
GLD1_SCHPO
[Raw transfer]




GOL_A_4(1JQA)
GLDA_GEOSE
[Raw transfer]




TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




22 PsiBlast_CBE 95.4832%-108 - C1 -1TA9 - GLD1_SCHPO -
7 PsiBlast_PDB 95.4430%-103 - C1 -3UHJ - ? -
48 Fugue 95.2732%-100 - C1 -1KQ3 2.9 GLDA_THEMA
24 HHSearch 95.2330% -99 - C1 -3UHJ - ? -
3 PsiBlast_PDB 95.2332%-108 - C1 -1TA9 2.2 GLD1_SCHPO
1 PsiBlast_PDB 95.1132%-103 - C1 -1KQ3 2.8 GLDA_THEMA
6 PsiBlast_PDB 92.4733%-102 - C1 -1JQ5 - GLDA_GEOSE -
5 PsiBlast_PDB 91.9033%-107 - C1 -1JQA 2.3 GLDA_GEOSE
29 HHSearch 91.3831%-105 - C1 -1KQ3 2.9 GLDA_THEMA
23 HHSearch 91.2931%-105 - C1 -1JQ5 - GLDA_GEOSE -
4 PsiBlast_PDB 91.1233%-106 - C1 -1JPU - GLDA_GEOSE -
47 Fugue 90.9731% -93 - C1 -1JQ5 - GLDA_GEOSE -
31 HHSearch 90.6530%-107 - C1 -1TA9 2.2 GLD1_SCHPO
21 PsiBlast_CBE 85.6436%-100 - C1 -4MCA 2.4 ?
2 PsiBlast_PDB 85.5736% -96 - C1 -4MCA 3.4 ?
11 PsiBlast_PDB 82.8323%-108 - C1 -1O2D - ? -
10 PsiBlast_PDB 82.6123%-108 - C1 -1VHD - ? -
30 HHSearch 79.5521%-100 - C1 -1O2D - ? -
32 HHSearch 76.5120%-100 - C1 -1VLJ - ? -
35 HHSearch 75.2119% -99 - C1 -3W5S - ? -