@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1822: (2016-03-29 )
MKKQKTVRAIALELIIKIENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHPDFTLEPVVLPEKLAQIKKDDFIQLLPTDIGSDGFFVSSLRKVKS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_B_4(3A4T)
TRM4_METJA
[Raw transfer]



SFG_A_2(2YXL)
?
[Raw transfer]



SAM_B_2(1SQF)
RSMB_ECOLI
[Raw transfer]



SAM_A_3(3M6V)
RSMF_THET8
[Raw transfer]
2 PsiBlast_PDB 89.6232% -72 - C1 -1SQG - RSMB_ECOLI -
51 Fugue 89.0531% -75 - C1 -1SQG - RSMB_ECOLI -
27 HHSearch 89.0331% -74 - C1 -1SQG - RSMB_ECOLI -
1 PsiBlast_PDB 88.6032% -71 - C1 -1SQF 8.2 RSMB_ECOLI
28 HHSearch 82.1427% -68 - C1 -2YXL - ? -
50 Fugue 80.9726% -57 - C1 -2YXL - ? -
3 PsiBlast_PDB 78.6629% -70 - C1 -2YXL 6.0 ?
8 PsiBlast_PDB 64.7930% -64 - C1 -3M6V 7.4 RSMF_THET8
34 HHSearch 64.0934% -71 - C1 -3AJD - TRM4_METJA -
7 PsiBlast_PDB 61.9230% -70 - C1 -3M6U - RSMF_THET8 -
5 PsiBlast_PDB 61.0933% -65 - C1 -3AJD - TRM4_METJA -
11 PsiBlast_PDB 61.0427% -69 - C1 -2B9E - NSUN5_HUMAN -
33 HHSearch 60.3328% -62 - C1 -2B9E - NSUN5_HUMAN -
21 PsiBlast_CBE 60.1133% -61 - C1 -3A4T 7.3 TRM4_METJA
53 Fugue 56.9920% -59 - C1 -4FP9 - NSUN4_HUMAN -
56 Fugue 47.3029% 30 - C1 -3M6W - RSMF_THET8 -
13 PsiBlast_PDB 46.0329% -55 - C1 -4FZV - NSUN4_HUMAN -
12 PsiBlast_PDB 46.0129% -58 - C1 -4FP9 - NSUN4_HUMAN -
37 HHSearch 45.2520% -78 - C1 -1TZV - NUSB_THEMA -
35 HHSearch 44.2926% -73 - C1 -3D3B - NUSB_ECOLI -